Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
COL7A1Q02388 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL7A1Q02388 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL7A1Q02388 ECEL1P2-202ENST00000465689 757 ntBASIC14.72□□□□□ -0.05
COL7A1Q02388 TMA16-209ENST00000513272 803 ntTSL 2 BASIC14.72□□□□□ -0.05
COL7A1Q02388 KRT126P-201ENST00000549467 1181 ntBASIC14.72□□□□□ -0.05
COL7A1Q02388 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL7A1Q02388 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC14.72□□□□□ -0.05
COL7A1Q02388 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL7A1Q02388 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL7A1Q02388 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL7A1Q02388 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL7A1Q02388 TPM4P1-201ENST00000436100 807 ntBASIC14.72□□□□□ -0.05
COL7A1Q02388 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL7A1Q02388 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC14.71□□□□□ -0.05
COL7A1Q02388 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL7A1Q02388 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC14.71□□□□□ -0.05
COL7A1Q02388 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL7A1Q02388 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL7A1Q02388 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL7A1Q02388 RER1-204ENST00000378518 522 ntTSL 3 BASIC14.71□□□□□ -0.05
COL7A1Q02388 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
COL7A1Q02388 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL7A1Q02388 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC14.71□□□□□ -0.05
COL7A1Q02388 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL7A1Q02388 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC14.71□□□□□ -0.05
COL7A1Q02388 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL7A1Q02388 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
COL7A1Q02388 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL7A1Q02388 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC14.7□□□□□ -0.06
COL7A1Q02388 ME2-206ENST00000638410 2289 ntTSL 5 BASIC14.7□□□□□ -0.06
COL7A1Q02388 ME2-210ENST00000639255 2262 ntTSL 5 BASIC14.7□□□□□ -0.06
COL7A1Q02388 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC14.7□□□□□ -0.06
COL7A1Q02388 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
COL7A1Q02388 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL7A1Q02388 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
COL7A1Q02388 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC14.7□□□□□ -0.06
COL7A1Q02388 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL7A1Q02388 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
COL7A1Q02388 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL7A1Q02388 KRT16P1-201ENST00000399124 1418 ntBASIC14.7□□□□□ -0.06
COL7A1Q02388 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL7A1Q02388 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL7A1Q02388 KRT18P48-201ENST00000434763 852 ntBASIC14.7□□□□□ -0.06
COL7A1Q02388 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC14.7□□□□□ -0.06
COL7A1Q02388 AC091076.1-201ENST00000610741 619 ntBASIC14.7□□□□□ -0.06
COL7A1Q02388 AC027702.1-201ENST00000563810 1770 ntBASIC14.7□□□□□ -0.06
COL7A1Q02388 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL7A1Q02388 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL7A1Q02388 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL7A1Q02388 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC14.69□□□□□ -0.06
COL7A1Q02388 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC14.69□□□□□ -0.06
COL7A1Q02388 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC14.69□□□□□ -0.06
COL7A1Q02388 KRT18P56-201ENST00000507275 550 ntBASIC14.69□□□□□ -0.06
COL7A1Q02388 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC14.69□□□□□ -0.06
COL7A1Q02388 AC006557.6-201ENST00000623071 864 ntBASIC14.69□□□□□ -0.06
COL7A1Q02388 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL7A1Q02388 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL7A1Q02388 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL7A1Q02388 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
COL7A1Q02388 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC14.69□□□□□ -0.06
COL7A1Q02388 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL7A1Q02388 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
COL7A1Q02388 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC14.69□□□□□ -0.06
COL7A1Q02388 PTPA-214ENST00000423100 988 ntTSL 2 BASIC14.69□□□□□ -0.06
COL7A1Q02388 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC14.69□□□□□ -0.06
COL7A1Q02388 FITM1-202ENST00000559294 800 ntBASIC14.69□□□□□ -0.06
COL7A1Q02388 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC14.69□□□□□ -0.06
COL7A1Q02388 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL7A1Q02388 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL7A1Q02388 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC14.69□□□□□ -0.06
COL7A1Q02388 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL7A1Q02388 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL7A1Q02388 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL7A1Q02388 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL7A1Q02388 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC14.68□□□□□ -0.06
COL7A1Q02388 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL7A1Q02388 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL7A1Q02388 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
COL7A1Q02388 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC14.68□□□□□ -0.06
COL7A1Q02388 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC14.68□□□□□ -0.06
COL7A1Q02388 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL7A1Q02388 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL7A1Q02388 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL7A1Q02388 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL7A1Q02388 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL7A1Q02388 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL7A1Q02388 MIR1238-201ENST00000408483 83 ntBASIC14.68□□□□□ -0.06
COL7A1Q02388 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC14.68□□□□□ -0.06
COL7A1Q02388 AC116562.2-201ENST00000507042 360 ntBASIC14.68□□□□□ -0.06
COL7A1Q02388 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC14.68□□□□□ -0.06
COL7A1Q02388 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC14.68□□□□□ -0.06
COL7A1Q02388 AL121829.2-201ENST00000620908 328 ntBASIC14.68□□□□□ -0.06
COL7A1Q02388 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC14.68□□□□□ -0.06
COL7A1Q02388 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL7A1Q02388 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL7A1Q02388 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL7A1Q02388 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL7A1Q02388 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC14.67□□□□□ -0.06
COL7A1Q02388 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms