Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC14.37□□□□□ -0.11
RPL39P62891 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC14.37□□□□□ -0.11
RPL39P62891 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RPL39P62891 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RPL39P62891 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RPL39P62891 BX323043.1-201ENST00000641006 1765 ntBASIC14.37□□□□□ -0.11
RPL39P62891 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RPL39P62891 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
RPL39P62891 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RPL39P62891 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
RPL39P62891 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RPL39P62891 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RPL39P62891 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
RPL39P62891 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RPL39P62891 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RPL39P62891 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
RPL39P62891 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RPL39P62891 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
RPL39P62891 AC009237.3-201ENST00000393279 1427 ntBASIC14.36□□□□□ -0.11
RPL39P62891 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC14.36□□□□□ -0.11
RPL39P62891 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
RPL39P62891 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC14.36□□□□□ -0.11
RPL39P62891 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC14.36□□□□□ -0.11
RPL39P62891 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC14.36□□□□□ -0.11
RPL39P62891 AC011298.3-201ENST00000615796 283 ntBASIC14.36□□□□□ -0.11
RPL39P62891 LBX2-AS1-202ENST00000603175 2083 ntBASIC14.36□□□□□ -0.11
RPL39P62891 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RPL39P62891 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RPL39P62891 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RPL39P62891 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RPL39P62891 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC14.36□□□□□ -0.11
RPL39P62891 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
RPL39P62891 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RPL39P62891 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
RPL39P62891 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC14.36□□□□□ -0.11
RPL39P62891 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RPL39P62891 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC14.36□□□□□ -0.11
RPL39P62891 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RPL39P62891 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC14.36□□□□□ -0.11
RPL39P62891 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RPL39P62891 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
RPL39P62891 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RPL39P62891 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
RPL39P62891 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
RPL39P62891 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
RPL39P62891 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC14.35□□□□□ -0.11
RPL39P62891 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RPL39P62891 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC14.35□□□□□ -0.11
RPL39P62891 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RPL39P62891 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC14.35□□□□□ -0.11
RPL39P62891 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC14.35□□□□□ -0.11
RPL39P62891 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
RPL39P62891 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RPL39P62891 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RPL39P62891 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RPL39P62891 OR2A1-AS1-204ENST00000470435 602 ntBASIC14.35□□□□□ -0.11
RPL39P62891 DUX4L19-201ENST00000557448 1267 ntBASIC14.35□□□□□ -0.11
RPL39P62891 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC14.35□□□□□ -0.11
RPL39P62891 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RPL39P62891 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC14.35□□□□□ -0.11
RPL39P62891 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
RPL39P62891 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RPL39P62891 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RPL39P62891 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC14.35□□□□□ -0.11
RPL39P62891 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RPL39P62891 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RPL39P62891 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RPL39P62891 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RPL39P62891 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC14.34□□□□□ -0.11
RPL39P62891 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC14.34□□□□□ -0.11
RPL39P62891 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
RPL39P62891 SNX3-202ENST00000349379 890 ntTSL 2 BASIC14.34□□□□□ -0.11
RPL39P62891 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC14.34□□□□□ -0.11
RPL39P62891 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC14.34□□□□□ -0.11
RPL39P62891 RNF146-206ENST00000480444 843 ntTSL 2 BASIC14.34□□□□□ -0.11
RPL39P62891 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC14.34□□□□□ -0.11
RPL39P62891 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC14.34□□□□□ -0.11
RPL39P62891 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC14.34□□□□□ -0.11
RPL39P62891 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPL39P62891 AC004408.2-201ENST00000623613 2777 ntBASIC14.34□□□□□ -0.11
RPL39P62891 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC14.33□□□□□ -0.11
RPL39P62891 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
RPL39P62891 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPL39P62891 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms