Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIM2P55344 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIM2P55344 AC010980.2-201ENST00000587099 1412 ntBASIC19.34■□□□□ 0.69
LIM2P55344 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
LIM2P55344 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
LIM2P55344 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
LIM2P55344 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
LIM2P55344 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIM2P55344 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIM2P55344 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIM2P55344 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIM2P55344 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIM2P55344 MCRIP2P1-201ENST00000394346 511 ntBASIC19.33■□□□□ 0.68
LIM2P55344 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.33■□□□□ 0.68
LIM2P55344 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.33■□□□□ 0.68
LIM2P55344 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.33■□□□□ 0.68
LIM2P55344 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIM2P55344 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.33■□□□□ 0.68
LIM2P55344 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.33■□□□□ 0.68
LIM2P55344 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.33■□□□□ 0.68
LIM2P55344 AL121832.2-201ENST00000610979 668 ntBASIC19.33■□□□□ 0.68
LIM2P55344 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIM2P55344 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIM2P55344 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
LIM2P55344 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIM2P55344 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
LIM2P55344 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.32■□□□□ 0.68
LIM2P55344 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
LIM2P55344 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIM2P55344 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIM2P55344 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIM2P55344 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIM2P55344 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIM2P55344 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIM2P55344 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.32■□□□□ 0.68
LIM2P55344 NCF1B-203ENST00000435988 1254 ntBASIC19.32■□□□□ 0.68
LIM2P55344 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.32■□□□□ 0.68
LIM2P55344 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.32■□□□□ 0.68
LIM2P55344 AC083906.2-201ENST00000511578 360 ntBASIC19.32■□□□□ 0.68
LIM2P55344 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.32■□□□□ 0.68
LIM2P55344 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIM2P55344 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
LIM2P55344 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.32■□□□□ 0.68
LIM2P55344 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIM2P55344 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
LIM2P55344 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
LIM2P55344 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIM2P55344 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.32■□□□□ 0.68
LIM2P55344 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIM2P55344 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIM2P55344 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIM2P55344 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIM2P55344 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.31■□□□□ 0.68
LIM2P55344 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.31■□□□□ 0.68
LIM2P55344 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIM2P55344 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIM2P55344 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.31■□□□□ 0.68
LIM2P55344 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.31■□□□□ 0.68
LIM2P55344 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.31■□□□□ 0.68
LIM2P55344 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.31■□□□□ 0.68
LIM2P55344 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.31■□□□□ 0.68
LIM2P55344 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.31■□□□□ 0.68
LIM2P55344 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIM2P55344 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.31■□□□□ 0.68
LIM2P55344 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.31■□□□□ 0.68
LIM2P55344 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.31■□□□□ 0.68
LIM2P55344 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIM2P55344 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIM2P55344 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIM2P55344 AC087633.2-202ENST00000565166 1439 ntBASIC19.31■□□□□ 0.68
LIM2P55344 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
LIM2P55344 AL121603.2-201ENST00000557373 2117 ntBASIC19.31■□□□□ 0.68
LIM2P55344 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIM2P55344 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIM2P55344 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
LIM2P55344 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIM2P55344 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.31■□□□□ 0.68
LIM2P55344 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIM2P55344 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIM2P55344 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIM2P55344 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.3■□□□□ 0.68
LIM2P55344 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.3■□□□□ 0.68
LIM2P55344 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIM2P55344 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIM2P55344 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.3■□□□□ 0.68
LIM2P55344 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.3■□□□□ 0.68
LIM2P55344 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
LIM2P55344 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIM2P55344 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIM2P55344 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.3■□□□□ 0.68
LIM2P55344 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.3■□□□□ 0.68
LIM2P55344 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.3■□□□□ 0.68
LIM2P55344 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIM2P55344 AC073314.1-201ENST00000568729 2216 ntBASIC19.3■□□□□ 0.68
LIM2P55344 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIM2P55344 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.3■□□□□ 0.68
LIM2P55344 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIM2P55344 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIM2P55344 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
LIM2P55344 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms