Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
NEK3P51956 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.96■□□□□ 0.95
NEK3P51956 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NEK3P51956 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NEK3P51956 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NEK3P51956 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
NEK3P51956 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
NEK3P51956 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
NEK3P51956 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NEK3P51956 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.96■□□□□ 0.95
NEK3P51956 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NEK3P51956 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NEK3P51956 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.95■□□□□ 0.94
NEK3P51956 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
NEK3P51956 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.95■□□□□ 0.94
NEK3P51956 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NEK3P51956 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
NEK3P51956 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
NEK3P51956 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
NEK3P51956 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NEK3P51956 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NEK3P51956 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NEK3P51956 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
NEK3P51956 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NEK3P51956 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NEK3P51956 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.95■□□□□ 0.94
NEK3P51956 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.95■□□□□ 0.94
NEK3P51956 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.95■□□□□ 0.94
NEK3P51956 AC016405.3-201ENST00000607710 860 ntBASIC20.95■□□□□ 0.94
NEK3P51956 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
NEK3P51956 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
NEK3P51956 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NEK3P51956 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NEK3P51956 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.95■□□□□ 0.94
NEK3P51956 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NEK3P51956 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NEK3P51956 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NEK3P51956 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
NEK3P51956 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NEK3P51956 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.94■□□□□ 0.94
NEK3P51956 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.94■□□□□ 0.94
NEK3P51956 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
NEK3P51956 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
NEK3P51956 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.94■□□□□ 0.94
NEK3P51956 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.94■□□□□ 0.94
NEK3P51956 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NEK3P51956 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.94■□□□□ 0.94
NEK3P51956 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.94■□□□□ 0.94
NEK3P51956 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NEK3P51956 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.94■□□□□ 0.94
NEK3P51956 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NEK3P51956 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
NEK3P51956 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NEK3P51956 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.94■□□□□ 0.94
NEK3P51956 MKRN4P-201ENST00000444706 1521 ntBASIC20.94■□□□□ 0.94
NEK3P51956 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NEK3P51956 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NEK3P51956 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.93■□□□□ 0.94
NEK3P51956 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.93■□□□□ 0.94
NEK3P51956 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
NEK3P51956 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NEK3P51956 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
NEK3P51956 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.93■□□□□ 0.94
NEK3P51956 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.93■□□□□ 0.94
NEK3P51956 AL512625.2-201ENST00000417533 625 ntBASIC20.93■□□□□ 0.94
NEK3P51956 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.93■□□□□ 0.94
NEK3P51956 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.93■□□□□ 0.94
NEK3P51956 AL138781.1-201ENST00000566567 1274 ntBASIC20.93■□□□□ 0.94
NEK3P51956 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.93■□□□□ 0.94
NEK3P51956 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.93■□□□□ 0.94
NEK3P51956 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
NEK3P51956 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NEK3P51956 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NEK3P51956 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.93■□□□□ 0.94
NEK3P51956 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NEK3P51956 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NEK3P51956 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NEK3P51956 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.92■□□□□ 0.94
NEK3P51956 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.92■□□□□ 0.94
NEK3P51956 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NEK3P51956 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NEK3P51956 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.92■□□□□ 0.94
NEK3P51956 AC091799.1-201ENST00000422823 811 ntBASIC20.92■□□□□ 0.94
NEK3P51956 AC093787.1-201ENST00000450396 207 ntBASIC20.92■□□□□ 0.94
NEK3P51956 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.92■□□□□ 0.94
NEK3P51956 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.92■□□□□ 0.94
NEK3P51956 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NEK3P51956 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NEK3P51956 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
NEK3P51956 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NEK3P51956 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
NEK3P51956 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NEK3P51956 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NEK3P51956 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.92■□□□□ 0.94
NEK3P51956 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
NEK3P51956 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.91■□□□□ 0.94
NEK3P51956 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NEK3P51956 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
NEK3P51956 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.91■□□□□ 0.94
NEK3P51956 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms