Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 BI2Q0110 1272 nt2.32□□□□□ -2.04
UPF3P48412 COX7YMR256C 183 nt2.32□□□□□ -2.04
UPF3P48412 YOR248WYOR248W 303 nt2.32□□□□□ -2.04
UPF3P48412 YOR333CYOR333C 417 nt2.32□□□□□ -2.04
UPF3P48412 snR54snR54 86 nt2.32□□□□□ -2.04
UPF3P48412 YSW1YBR148W 1830 nt2.32□□□□□ -2.04
UPF3P48412 VPS52YDR484W 1926 nt2.32□□□□□ -2.04
UPF3P48412 MET18YIL128W 3099 nt2.31□□□□□ -2.04
UPF3P48412 MNE1YOR350C 1992 nt2.31□□□□□ -2.04
UPF3P48412 TOF1YNL273W 3717 nt2.31□□□□□ -2.04
UPF3P48412 HMLALPHA2YCL067C 633 nt2.31□□□□□ -2.04
UPF3P48412 MATALPHA2YCR039C 633 nt2.31□□□□□ -2.04
UPF3P48412 ATP17YDR377W 306 nt2.31□□□□□ -2.04
UPF3P48412 YHR125WYHR125W 306 nt2.31□□□□□ -2.04
UPF3P48412 YIL156W-BYIL156W-B 222 nt2.31□□□□□ -2.04
UPF3P48412 BNI1YNL271C 5862 nt2.31□□□□□ -2.04
UPF3P48412 SNF5YBR289W 2718 nt2.31□□□□□ -2.04
UPF3P48412 YDL041WYDL041W 354 nt2.3□□□□□ -2.04
UPF3P48412 YJL007CYJL007C 315 nt2.3□□□□□ -2.04
UPF3P48412 SEC22YLR268W 645 nt2.3□□□□□ -2.04
UPF3P48412 YMR052C-AYMR052C-A 366 nt2.3□□□□□ -2.04
UPF3P48412 SPC29YPL124W 762 nt2.3□□□□□ -2.04
UPF3P48412 ASM4YDL088C 1587 nt2.3□□□□□ -2.04
UPF3P48412 KAR3YPR141C 2190 nt2.3□□□□□ -2.04
UPF3P48412 SGD1YLR336C 2700 nt2.3□□□□□ -2.04
UPF3P48412 IST2YBR086C 2841 nt2.3□□□□□ -2.04
UPF3P48412 MMS22YLR320W 4365 nt2.3□□□□□ -2.04
UPF3P48412 TUS1YLR425W 3924 nt2.29□□□□□ -2.04
UPF3P48412 PET309YLR067C 2898 nt2.29□□□□□ -2.04
UPF3P48412 YCR001WYCR001W 315 nt2.29□□□□□ -2.04
UPF3P48412 snR79snR79 84 nt2.29□□□□□ -2.04
UPF3P48412 YDR250CYDR250C 276 nt2.29□□□□□ -2.04
UPF3P48412 YER084W-AYER084W-A 513 nt2.29□□□□□ -2.04
UPF3P48412 SYM1YLR251W 594 nt2.29□□□□□ -2.04
UPF3P48412 YOR032W-AYOR032W-A 201 nt2.29□□□□□ -2.04
UPF3P48412 RTC6YPL183W-A 282 nt2.29□□□□□ -2.04
UPF3P48412 YPR039WYPR039W 336 nt2.29□□□□□ -2.04
UPF3P48412 DAD3YBR233W-A 285 nt2.29□□□□□ -2.04
UPF3P48412 snR43snR43 209 nt2.29□□□□□ -2.04
UPF3P48412 YPR097WYPR097W 3222 nt2.29□□□□□ -2.04
UPF3P48412 VPS13YLL040C 9435 nt2.29□□□□□ -2.04
UPF3P48412 SCD5YOR329C 2619 nt2.28□□□□□ -2.04
UPF3P48412 IES5YER092W 378 nt2.28□□□□□ -2.04
UPF3P48412 LSO2YGR169C-A 279 nt2.28□□□□□ -2.04
UPF3P48412 RPF1YHR088W 888 nt2.28□□□□□ -2.04
UPF3P48412 YKL165C-AYKL165C-A 234 nt2.28□□□□□ -2.04
UPF3P48412 YMR324CYMR324C 243 nt2.28□□□□□ -2.04
UPF3P48412 PEX4YGR133W 552 nt2.27□□□□□ -2.05
UPF3P48412 PSY1YKL076C 384 nt2.27□□□□□ -2.05
UPF3P48412 AIM29YKR074W 468 nt2.27□□□□□ -2.05
UPF3P48412 GPX2YBR244W 489 nt2.27□□□□□ -2.05
UPF3P48412 SAP185YJL098W 3177 nt2.27□□□□□ -2.05
UPF3P48412 GRR1YJR090C 3456 nt2.26□□□□□ -2.05
UPF3P48412 MSB1YOR188W 3414 nt2.26□□□□□ -2.05
UPF3P48412 HER1YOR227W 3741 nt2.26□□□□□ -2.05
UPF3P48412 RVS161YCR009C 798 nt2.26□□□□□ -2.05
UPF3P48412 YEL030C-AYEL030C-A 315 nt2.26□□□□□ -2.05
UPF3P48412 NBL1YHR199C-A 222 nt2.26□□□□□ -2.05
UPF3P48412 snR13snR13 124 nt2.26□□□□□ -2.05
UPF3P48412 MNL2YLR057W 2550 nt2.26□□□□□ -2.05
UPF3P48412 DNA2YHR164C 4569 nt2.26□□□□□ -2.05
UPF3P48412 RUD3YOR216C 1455 nt2.26□□□□□ -2.05
UPF3P48412 SMY1YKL079W 1971 nt2.25□□□□□ -2.05
UPF3P48412 CDC27YBL084C 2277 nt2.25□□□□□ -2.05
UPF3P48412 STH1YIL126W 4080 nt2.25□□□□□ -2.05
UPF3P48412 SNX41YDR425W 1878 nt2.25□□□□□ -2.05
UPF3P48412 YER068C-AYER068C-A 432 nt2.25□□□□□ -2.05
UPF3P48412 TMN3YER113C 2121 nt2.25□□□□□ -2.05
UPF3P48412 YHR180W-AYHR180W-A 183 nt2.25□□□□□ -2.05
UPF3P48412 YKR075W-AYKR075W-A 270 nt2.25□□□□□ -2.05
UPF3P48412 YLR269CYLR269C 351 nt2.25□□□□□ -2.05
UPF3P48412 snR41snR41 95 nt2.25□□□□□ -2.05
UPF3P48412 PDR3YBL005W 2931 nt2.25□□□□□ -2.05
UPF3P48412 STB4YMR019W 2850 nt2.25□□□□□ -2.05
UPF3P48412 VPS35YJL154C 2835 nt2.25□□□□□ -2.05
UPF3P48412 NAM7YMR080C 2916 nt2.24□□□□□ -2.05
UPF3P48412 SCP160YJL080C 3669 nt2.24□□□□□ -2.05
UPF3P48412 SGS1YMR190C 4344 nt2.24□□□□□ -2.05
UPF3P48412 YDR286CYDR286C 345 nt2.24□□□□□ -2.05
UPF3P48412 PEX17YNL214W 600 nt2.24□□□□□ -2.05
UPF3P48412 YPL205CYPL205C 345 nt2.24□□□□□ -2.05
UPF3P48412 DNF1YER166W 4716 nt2.24□□□□□ -2.05
UPF3P48412 VPS8YAL002W 3825 nt2.24□□□□□ -2.05
UPF3P48412 YDR341CYDR341C 1824 nt2.24□□□□□ -2.05
UPF3P48412 RTT107YHR154W 3213 nt2.23□□□□□ -2.05
UPF3P48412 YER006C-AYER006C-A 318 nt2.23□□□□□ -2.05
UPF3P48412 GET1YGL020C 708 nt2.23□□□□□ -2.05
UPF3P48412 YGR025WYGR025W 303 nt2.23□□□□□ -2.05
UPF3P48412 RPS18BYML026C 441 nt2.23□□□□□ -2.05
UPF3P48412 CMC2YBL059C-A 330 nt2.23□□□□□ -2.05
UPF3P48412 RPL36BYPL249C-A 303 nt2.23□□□□□ -2.05
UPF3P48412 MGM1YOR211C 2646 nt2.22□□□□□ -2.05
UPF3P48412 VTC3YPL019C 2508 nt2.22□□□□□ -2.05
UPF3P48412 VAR1Q0140 1197 nt2.22□□□□□ -2.05
UPF3P48412 YKL063CYKL063C 504 nt2.22□□□□□ -2.05
UPF3P48412 YMR153C-AYMR153C-A 336 nt2.22□□□□□ -2.05
UPF3P48412 TOM22YNL131W 459 nt2.22□□□□□ -2.05
UPF3P48412 VMA9YCL005W-A 222 nt2.22□□□□□ -2.05
UPF3P48412 SEC16YPL085W 6588 nt2.22□□□□□ -2.05
UPF3P48412 SCH9YHR205W 2475 nt2.22□□□□□ -2.05
Retrieved 100 of 7,029 protein–RNA pairs in 40.9 ms