Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.08■□□□□ 0.65
RFX3P48380 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.08■□□□□ 0.65
RFX3P48380 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.08■□□□□ 0.64
RFX3P48380 TERF1P5-201ENST00000477545 1207 ntBASIC19.08■□□□□ 0.64
RFX3P48380 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.08■□□□□ 0.64
RFX3P48380 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.08■□□□□ 0.64
RFX3P48380 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.08■□□□□ 0.64
RFX3P48380 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
RFX3P48380 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
RFX3P48380 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
RFX3P48380 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
RFX3P48380 AC116050.2-201ENST00000612102 1779 ntBASIC19.08■□□□□ 0.64
RFX3P48380 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
RFX3P48380 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
RFX3P48380 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
RFX3P48380 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
RFX3P48380 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RFX3P48380 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
RFX3P48380 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX3P48380 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX3P48380 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.07■□□□□ 0.64
RFX3P48380 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.07■□□□□ 0.64
RFX3P48380 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX3P48380 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX3P48380 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RFX3P48380 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
RFX3P48380 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX3P48380 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX3P48380 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
RFX3P48380 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX3P48380 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX3P48380 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.06■□□□□ 0.64
RFX3P48380 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
RFX3P48380 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
RFX3P48380 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 AC004911.1-201ENST00000416316 871 ntBASIC19.06■□□□□ 0.64
RFX3P48380 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.06■□□□□ 0.64
RFX3P48380 AC091799.1-201ENST00000422823 811 ntBASIC19.06■□□□□ 0.64
RFX3P48380 AC006015.1-201ENST00000429970 570 ntBASIC19.06■□□□□ 0.64
RFX3P48380 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.06■□□□□ 0.64
RFX3P48380 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.06■□□□□ 0.64
RFX3P48380 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.06■□□□□ 0.64
RFX3P48380 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
RFX3P48380 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.06■□□□□ 0.64
RFX3P48380 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
RFX3P48380 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX3P48380 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.06■□□□□ 0.64
RFX3P48380 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
RFX3P48380 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RFX3P48380 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.05■□□□□ 0.64
RFX3P48380 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX3P48380 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX3P48380 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX3P48380 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
RFX3P48380 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RFX3P48380 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.05■□□□□ 0.64
RFX3P48380 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.05■□□□□ 0.64
RFX3P48380 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.05■□□□□ 0.64
RFX3P48380 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.05■□□□□ 0.64
RFX3P48380 AL137784.2-201ENST00000607332 1000 ntBASIC19.05■□□□□ 0.64
RFX3P48380 AC243732.1-201ENST00000612648 864 ntBASIC19.05■□□□□ 0.64
RFX3P48380 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX3P48380 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX3P48380 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.05■□□□□ 0.64
RFX3P48380 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX3P48380 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX3P48380 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.05■□□□□ 0.64
RFX3P48380 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX3P48380 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RFX3P48380 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX3P48380 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX3P48380 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX3P48380 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX3P48380 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RFX3P48380 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX3P48380 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RFX3P48380 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.04■□□□□ 0.64
RFX3P48380 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.04■□□□□ 0.64
RFX3P48380 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.04■□□□□ 0.64
RFX3P48380 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX3P48380 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX3P48380 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
RFX3P48380 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX3P48380 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms