Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 CMC2YBL059C-A 330 nt1.15□□□□□ -2.23
CUP9P41817 ASM4YDL088C 1587 nt1.15□□□□□ -2.23
CUP9P41817 YDR210W-AYDR210W-A 1317 nt1.15□□□□□ -2.23
CUP9P41817 YOR343W-AYOR343W-A 1317 nt1.15□□□□□ -2.23
CUP9P41817 CMC1YKL137W 336 nt1.14□□□□□ -2.23
CUP9P41817 KAR9YPL269W 1935 nt1.14□□□□□ -2.23
CUP9P41817 CDC24YAL041W 2565 nt1.14□□□□□ -2.23
CUP9P41817 APM3YBR288C 1452 nt1.13□□□□□ -2.23
CUP9P41817 BRO1YPL084W 2535 nt1.13□□□□□ -2.23
CUP9P41817 HMI1YOL095C 2121 nt1.13□□□□□ -2.23
CUP9P41817 SPO75YLL005C 2607 nt1.13□□□□□ -2.23
CUP9P41817 PBY1YBR094W 2262 nt1.12□□□□□ -2.23
CUP9P41817 YDL009CYDL009C 324 nt1.12□□□□□ -2.23
CUP9P41817 YDR248CYDR248C 582 nt1.12□□□□□ -2.23
CUP9P41817 RSM28YDR494W 1086 nt1.12□□□□□ -2.23
CUP9P41817 SNO3YFL060C 669 nt1.12□□□□□ -2.23
CUP9P41817 YGL042CYGL042C 306 nt1.12□□□□□ -2.23
CUP9P41817 GEP7YGL057C 864 nt1.12□□□□□ -2.23
CUP9P41817 SNO2YNL334C 669 nt1.12□□□□□ -2.23
CUP9P41817 MMS22YLR320W 4365 nt1.12□□□□□ -2.23
CUP9P41817 TTI1YKL033W 3117 nt1.12□□□□□ -2.23
CUP9P41817 YDR034C-CYDR034C-C 1317 nt1.12□□□□□ -2.23
CUP9P41817 YLR410W-AYLR410W-A 1317 nt1.12□□□□□ -2.23
CUP9P41817 MAD1YGL086W 2250 nt1.12□□□□□ -2.23
CUP9P41817 CDC27YBL084C 2277 nt1.12□□□□□ -2.23
CUP9P41817 15S_rRNA15S_rRNA 1649 nt1.11□□□□□ -2.23
CUP9P41817 APL2YKL135C 2181 nt1.11□□□□□ -2.23
CUP9P41817 YHR214W-AYHR214W-A 486 nt1.11□□□□□ -2.23
CUP9P41817 PEP8YJL053W 1140 nt1.11□□□□□ -2.23
CUP9P41817 YAR068WYAR068W 486 nt1.11□□□□□ -2.23
CUP9P41817 MTG1YMR097C 1104 nt1.11□□□□□ -2.23
CUP9P41817 YPL119C-AYPL119C-A 264 nt1.11□□□□□ -2.23
CUP9P41817 AHC1YOR023C 1701 nt1.11□□□□□ -2.23
CUP9P41817 DAS1YJL149W 1992 nt1.1□□□□□ -2.23
CUP9P41817 YSW1YBR148W 1830 nt1.1□□□□□ -2.23
CUP9P41817 NOP53YPL146C 1368 nt1.1□□□□□ -2.23
CUP9P41817 SPE1YKL184W 1401 nt1.1□□□□□ -2.23
CUP9P41817 RVS161YCR009C 798 nt1.1□□□□□ -2.23
CUP9P41817 TMA20YER007C-A 546 nt1.1□□□□□ -2.23
CUP9P41817 POL32YJR043C 1053 nt1.1□□□□□ -2.23
CUP9P41817 MCM22YJR135C 720 nt1.1□□□□□ -2.23
CUP9P41817 YLR031WYLR031W 561 nt1.1□□□□□ -2.23
CUP9P41817 YLR140WYLR140W 327 nt1.1□□□□□ -2.23
CUP9P41817 YBL062WYBL062W 381 nt1.1□□□□□ -2.23
CUP9P41817 OST2YOR103C 393 nt1.1□□□□□ -2.23
CUP9P41817 YOR105WYOR105W 327 nt1.1□□□□□ -2.23
CUP9P41817 SIP4YJL089W 2490 nt1.1□□□□□ -2.23
CUP9P41817 MAK10YEL053C 2202 nt1.09□□□□□ -2.23
CUP9P41817 MUD2YKL074C 1584 nt1.09□□□□□ -2.23
CUP9P41817 COX1Q0045 1605 nt1.09□□□□□ -2.23
CUP9P41817 BST1YFL025C 3090 nt1.09□□□□□ -2.23
CUP9P41817 CDC36YDL165W 576 nt1.09□□□□□ -2.23
CUP9P41817 VPS74YDR372C 1038 nt1.09□□□□□ -2.23
CUP9P41817 RSM18YER050C 417 nt1.09□□□□□ -2.23
CUP9P41817 RAD6YGL058W 519 nt1.09□□□□□ -2.23
CUP9P41817 GIC1YHR061C 945 nt1.09□□□□□ -2.23
CUP9P41817 YIR020C-BYIR020C-B 735 nt1.09□□□□□ -2.23
CUP9P41817 TIF11YMR260C 462 nt1.09□□□□□ -2.23
CUP9P41817 RPL33BYOR234C 324 nt1.09□□□□□ -2.23
CUP9P41817 ATP15YPL271W 189 nt1.09□□□□□ -2.23
CUP9P41817 FRK1YPL141C 2598 nt1.09□□□□□ -2.24
CUP9P41817 RIC1YLR039C 3171 nt1.09□□□□□ -2.24
CUP9P41817 ZRG8YER033C 3231 nt1.09□□□□□ -2.24
CUP9P41817 MZM1YDR493W 372 nt1.08□□□□□ -2.24
CUP9P41817 RPL29YFR032C-A 180 nt1.08□□□□□ -2.24
CUP9P41817 YNL010WYNL010W 726 nt1.08□□□□□ -2.24
CUP9P41817 PET123YOR158W 957 nt1.08□□□□□ -2.24
CUP9P41817 SPR2YOR214C 711 nt1.08□□□□□ -2.24
CUP9P41817 SHE4YOR035C 2370 nt1.08□□□□□ -2.24
CUP9P41817 SHE9YDR393W 1371 nt1.08□□□□□ -2.24
CUP9P41817 YCR102W-AYCR102W-A 198 nt1.07□□□□□ -2.24
CUP9P41817 DAD1YDR016C 285 nt1.07□□□□□ -2.24
CUP9P41817 YHR050W-AYHR050W-A 171 nt1.07□□□□□ -2.24
CUP9P41817 COX3Q0275 810 nt1.07□□□□□ -2.24
CUP9P41817 HYM1YKL189W 1200 nt1.07□□□□□ -2.24
CUP9P41817 PGA1YNL158W 597 nt1.07□□□□□ -2.24
CUP9P41817 SNC2YOR327C 348 nt1.07□□□□□ -2.24
CUP9P41817 ROX1YPR065W 1107 nt1.07□□□□□ -2.24
CUP9P41817 IRE1YHR079C 3348 nt1.07□□□□□ -2.24
CUP9P41817 KAP122YGL016W 3246 nt1.07□□□□□ -2.24
CUP9P41817 MSC6YOR354C 2079 nt1.06□□□□□ -2.24
CUP9P41817 RAD9YDR217C 3930 nt1.06□□□□□ -2.24
CUP9P41817 YER088C-AYER088C-A 324 nt1.06□□□□□ -2.24
CUP9P41817 LOC1YFR001W 615 nt1.06□□□□□ -2.24
CUP9P41817 VOA1YGR106C 798 nt1.06□□□□□ -2.24
CUP9P41817 YOL159CYOL159C 516 nt1.06□□□□□ -2.24
CUP9P41817 RTC6YPL183W-A 282 nt1.06□□□□□ -2.24
CUP9P41817 YGR250CYGR250C 2346 nt1.06□□□□□ -2.24
CUP9P41817 YNL284C-BYNL284C-B 5268 nt1.06□□□□□ -2.24
CUP9P41817 CTR9YOL145C 3234 nt1.06□□□□□ -2.24
CUP9P41817 NUP120YKL057C 3114 nt1.05□□□□□ -2.24
CUP9P41817 YIL082WYIL082W 873 nt1.05□□□□□ -2.24
CUP9P41817 YNL226WYNL226W 411 nt1.05□□□□□ -2.24
CUP9P41817 TRM732YMR259C 4263 nt1.05□□□□□ -2.24
CUP9P41817 SEF1YBL066C 3447 nt1.05□□□□□ -2.24
CUP9P41817 ALK1YGL021W 2283 nt1.05□□□□□ -2.24
CUP9P41817 RSM22YKL155C 1887 nt1.05□□□□□ -2.24
CUP9P41817 SMC4YLR086W 4257 nt1.04□□□□□ -2.24
CUP9P41817 snR59snR59 78 nt1.04□□□□□ -2.24
CUP9P41817 YDR194W-AYDR194W-A 153 nt1.04□□□□□ -2.24
Retrieved 100 of 7,029 protein–RNA pairs in 27.2 ms