Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SOX3P41225 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.11■□□□□ 0.65
SOX3P41225 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.11■□□□□ 0.65
SOX3P41225 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.11■□□□□ 0.65
SOX3P41225 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.11■□□□□ 0.65
SOX3P41225 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
SOX3P41225 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SOX3P41225 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SOX3P41225 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.11■□□□□ 0.65
SOX3P41225 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SOX3P41225 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SOX3P41225 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.1■□□□□ 0.65
SOX3P41225 AC007952.6-201ENST00000573168 2673 ntBASIC19.1■□□□□ 0.65
SOX3P41225 AC003957.1-201ENST00000625108 2673 ntBASIC19.1■□□□□ 0.65
SOX3P41225 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SOX3P41225 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
SOX3P41225 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SOX3P41225 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.1■□□□□ 0.65
SOX3P41225 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SOX3P41225 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
SOX3P41225 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.1■□□□□ 0.65
SOX3P41225 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.1■□□□□ 0.65
SOX3P41225 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.1■□□□□ 0.65
SOX3P41225 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.1■□□□□ 0.65
SOX3P41225 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.1■□□□□ 0.65
SOX3P41225 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.1■□□□□ 0.65
SOX3P41225 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SOX3P41225 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SOX3P41225 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SOX3P41225 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
SOX3P41225 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.1■□□□□ 0.65
SOX3P41225 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SOX3P41225 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SOX3P41225 MKRN4P-201ENST00000444706 1521 ntBASIC19.1■□□□□ 0.65
SOX3P41225 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
SOX3P41225 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.09■□□□□ 0.65
SOX3P41225 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.09■□□□□ 0.65
SOX3P41225 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SOX3P41225 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.09■□□□□ 0.65
SOX3P41225 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
SOX3P41225 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SOX3P41225 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SOX3P41225 CDV3P1-201ENST00000471403 739 ntBASIC19.09■□□□□ 0.65
SOX3P41225 RARRES2P4-201ENST00000514074 484 ntBASIC19.09■□□□□ 0.65
SOX3P41225 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.09■□□□□ 0.65
SOX3P41225 AL138781.1-201ENST00000566567 1274 ntBASIC19.09■□□□□ 0.65
SOX3P41225 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.09■□□□□ 0.65
SOX3P41225 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
SOX3P41225 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SOX3P41225 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.09■□□□□ 0.65
SOX3P41225 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.09■□□□□ 0.65
SOX3P41225 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SOX3P41225 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
SOX3P41225 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.65
SOX3P41225 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SOX3P41225 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
SOX3P41225 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.08■□□□□ 0.65
SOX3P41225 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.65
SOX3P41225 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.08■□□□□ 0.64
SOX3P41225 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.08■□□□□ 0.64
SOX3P41225 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.08■□□□□ 0.64
SOX3P41225 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SOX3P41225 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SOX3P41225 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.08■□□□□ 0.64
SOX3P41225 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SOX3P41225 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SOX3P41225 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SOX3P41225 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SOX3P41225 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SOX3P41225 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SOX3P41225 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SOX3P41225 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.07■□□□□ 0.64
SOX3P41225 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.07■□□□□ 0.64
SOX3P41225 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SOX3P41225 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SOX3P41225 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SOX3P41225 AL512625.2-201ENST00000417533 625 ntBASIC19.07■□□□□ 0.64
SOX3P41225 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SOX3P41225 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.07■□□□□ 0.64
SOX3P41225 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.07■□□□□ 0.64
SOX3P41225 AC142086.2-201ENST00000569753 217 ntBASIC19.07■□□□□ 0.64
SOX3P41225 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.07■□□□□ 0.64
SOX3P41225 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.07■□□□□ 0.64
SOX3P41225 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SOX3P41225 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.07■□□□□ 0.64
SOX3P41225 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.07■□□□□ 0.64
SOX3P41225 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SOX3P41225 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SOX3P41225 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SOX3P41225 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SOX3P41225 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.07■□□□□ 0.64
SOX3P41225 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SOX3P41225 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SOX3P41225 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
SOX3P41225 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SOX3P41225 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SOX3P41225 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.06■□□□□ 0.64
SOX3P41225 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SOX3P41225 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SOX3P41225 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms