Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.92■□□□□ 0.78
SHMT2P34897 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.92■□□□□ 0.78
SHMT2P34897 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHMT2P34897 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHMT2P34897 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHMT2P34897 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHMT2P34897 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
SHMT2P34897 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.92■□□□□ 0.78
SHMT2P34897 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.91■□□□□ 0.78
SHMT2P34897 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
SHMT2P34897 LINC01006-201ENST00000333319 2292 ntBASIC19.91■□□□□ 0.78
SHMT2P34897 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHMT2P34897 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHMT2P34897 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.91■□□□□ 0.78
SHMT2P34897 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SHMT2P34897 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHMT2P34897 AL355802.2-201ENST00000402069 882 ntBASIC19.91■□□□□ 0.78
SHMT2P34897 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
SHMT2P34897 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.91■□□□□ 0.78
SHMT2P34897 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.91■□□□□ 0.78
SHMT2P34897 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.91■□□□□ 0.78
SHMT2P34897 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHMT2P34897 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHMT2P34897 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.91■□□□□ 0.78
SHMT2P34897 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHMT2P34897 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHMT2P34897 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.9■□□□□ 0.78
SHMT2P34897 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SHMT2P34897 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHMT2P34897 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHMT2P34897 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHMT2P34897 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SHMT2P34897 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHMT2P34897 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHMT2P34897 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.9■□□□□ 0.78
SHMT2P34897 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SHMT2P34897 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.9■□□□□ 0.78
SHMT2P34897 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.9■□□□□ 0.78
SHMT2P34897 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.9■□□□□ 0.78
SHMT2P34897 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
SHMT2P34897 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.9■□□□□ 0.78
SHMT2P34897 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
SHMT2P34897 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SHMT2P34897 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHMT2P34897 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHMT2P34897 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SHMT2P34897 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SHMT2P34897 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.9■□□□□ 0.78
SHMT2P34897 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHMT2P34897 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SHMT2P34897 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SHMT2P34897 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SHMT2P34897 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHMT2P34897 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHMT2P34897 CYP21A1P-202ENST00000354927 1481 ntBASIC19.89■□□□□ 0.77
SHMT2P34897 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHMT2P34897 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SHMT2P34897 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
SHMT2P34897 MIPEPP3-201ENST00000412105 444 ntBASIC19.89■□□□□ 0.77
SHMT2P34897 BX276092.2-201ENST00000417668 665 ntBASIC19.89■□□□□ 0.77
SHMT2P34897 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.89■□□□□ 0.77
SHMT2P34897 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.89■□□□□ 0.77
SHMT2P34897 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SHMT2P34897 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.89■□□□□ 0.77
SHMT2P34897 AC142086.2-201ENST00000569753 217 ntBASIC19.89■□□□□ 0.77
SHMT2P34897 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SHMT2P34897 AC121338.2-201ENST00000622535 1744 ntBASIC19.89■□□□□ 0.77
SHMT2P34897 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.88■□□□□ 0.77
SHMT2P34897 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHMT2P34897 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHMT2P34897 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.88■□□□□ 0.77
SHMT2P34897 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHMT2P34897 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHMT2P34897 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHMT2P34897 PGM5P4-201ENST00000421970 445 ntBASIC19.88■□□□□ 0.77
SHMT2P34897 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.88■□□□□ 0.77
SHMT2P34897 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.88■□□□□ 0.77
SHMT2P34897 MIR4758-201ENST00000577688 71 ntBASIC19.88■□□□□ 0.77
SHMT2P34897 CYP2T3P-201ENST00000601990 817 ntBASIC19.88■□□□□ 0.77
SHMT2P34897 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SHMT2P34897 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.88■□□□□ 0.77
SHMT2P34897 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.88■□□□□ 0.77
SHMT2P34897 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHMT2P34897 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.88■□□□□ 0.77
SHMT2P34897 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHMT2P34897 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SHMT2P34897 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHMT2P34897 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SHMT2P34897 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SHMT2P34897 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.87■□□□□ 0.77
SHMT2P34897 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SHMT2P34897 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SHMT2P34897 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SHMT2P34897 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SHMT2P34897 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SHMT2P34897 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.87■□□□□ 0.77
SHMT2P34897 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.87■□□□□ 0.77
SHMT2P34897 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.87■□□□□ 0.77
SHMT2P34897 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.87■□□□□ 0.77
SHMT2P34897 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms