Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN4P29074 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.37■□□□□ 0.85
PTPN4P29074 HLA-L-209ENST00000420110 1011 ntBASIC20.37■□□□□ 0.85
PTPN4P29074 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.37■□□□□ 0.85
PTPN4P29074 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.37■□□□□ 0.85
PTPN4P29074 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.37■□□□□ 0.85
PTPN4P29074 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.37■□□□□ 0.85
PTPN4P29074 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN4P29074 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.37■□□□□ 0.85
PTPN4P29074 AC112907.3-201ENST00000577781 2400 ntBASIC20.37■□□□□ 0.85
PTPN4P29074 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN4P29074 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN4P29074 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
PTPN4P29074 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
PTPN4P29074 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN4P29074 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.36■□□□□ 0.85
PTPN4P29074 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
PTPN4P29074 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN4P29074 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN4P29074 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN4P29074 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN4P29074 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN4P29074 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN4P29074 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
PTPN4P29074 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.36■□□□□ 0.85
PTPN4P29074 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.36■□□□□ 0.85
PTPN4P29074 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.36■□□□□ 0.85
PTPN4P29074 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN4P29074 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN4P29074 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
PTPN4P29074 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.36■□□□□ 0.85
PTPN4P29074 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.36■□□□□ 0.85
PTPN4P29074 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN4P29074 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
PTPN4P29074 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN4P29074 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN4P29074 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN4P29074 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.35■□□□□ 0.85
PTPN4P29074 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN4P29074 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN4P29074 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN4P29074 KRT18P11-201ENST00000435214 1283 ntBASIC20.35■□□□□ 0.85
PTPN4P29074 AC026185.1-201ENST00000445748 174 ntBASIC20.35■□□□□ 0.85
PTPN4P29074 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN4P29074 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.35■□□□□ 0.85
PTPN4P29074 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.35■□□□□ 0.85
PTPN4P29074 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN4P29074 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN4P29074 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.35■□□□□ 0.85
PTPN4P29074 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
PTPN4P29074 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN4P29074 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN4P29074 AC009237.3-201ENST00000393279 1427 ntBASIC20.35■□□□□ 0.85
PTPN4P29074 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN4P29074 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN4P29074 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN4P29074 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.34■□□□□ 0.85
PTPN4P29074 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
PTPN4P29074 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.34■□□□□ 0.85
PTPN4P29074 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
PTPN4P29074 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN4P29074 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN4P29074 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN4P29074 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.34■□□□□ 0.85
PTPN4P29074 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
PTPN4P29074 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN4P29074 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN4P29074 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN4P29074 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
PTPN4P29074 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN4P29074 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.34■□□□□ 0.85
PTPN4P29074 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN4P29074 AL162377.1-201ENST00000618844 1793 ntBASIC20.34■□□□□ 0.85
PTPN4P29074 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN4P29074 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN4P29074 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.33■□□□□ 0.85
PTPN4P29074 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PTPN4P29074 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
PTPN4P29074 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTPN4P29074 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.33■□□□□ 0.85
PTPN4P29074 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
PTPN4P29074 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTPN4P29074 AC005224.4-201ENST00000583262 1652 ntBASIC20.33■□□□□ 0.85
PTPN4P29074 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PTPN4P29074 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.33■□□□□ 0.85
PTPN4P29074 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTPN4P29074 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTPN4P29074 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTPN4P29074 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.33■□□□□ 0.85
PTPN4P29074 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PTPN4P29074 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
PTPN4P29074 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTPN4P29074 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.33■□□□□ 0.84
PTPN4P29074 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTPN4P29074 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTPN4P29074 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTPN4P29074 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
PTPN4P29074 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.33■□□□□ 0.84
PTPN4P29074 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
PTPN4P29074 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms