Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.52■■□□□ 1.04
COL6A3P12111 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.52■■□□□ 1.04
COL6A3P12111 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC21.52■■□□□ 1.04
COL6A3P12111 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.52■■□□□ 1.04
COL6A3P12111 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL6A3P12111 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.52■■□□□ 1.04
COL6A3P12111 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
COL6A3P12111 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.52■■□□□ 1.03
COL6A3P12111 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.03
COL6A3P12111 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
COL6A3P12111 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL6A3P12111 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL6A3P12111 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.51■■□□□ 1.03
COL6A3P12111 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL6A3P12111 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.51■■□□□ 1.03
COL6A3P12111 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL6A3P12111 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC21.51■■□□□ 1.03
COL6A3P12111 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL6A3P12111 PGM5P4-201ENST00000421970 445 ntBASIC21.51■■□□□ 1.03
COL6A3P12111 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.51■■□□□ 1.03
COL6A3P12111 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL6A3P12111 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A3P12111 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC21.5■■□□□ 1.03
COL6A3P12111 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.5■■□□□ 1.03
COL6A3P12111 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A3P12111 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A3P12111 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A3P12111 NBPF21P-201ENST00000425093 1451 ntBASIC21.5■■□□□ 1.03
COL6A3P12111 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A3P12111 KRT16P1-201ENST00000399124 1418 ntBASIC21.5■■□□□ 1.03
COL6A3P12111 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A3P12111 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A3P12111 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
COL6A3P12111 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.5■■□□□ 1.03
COL6A3P12111 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.5■■□□□ 1.03
COL6A3P12111 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A3P12111 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A3P12111 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A3P12111 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
COL6A3P12111 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A3P12111 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A3P12111 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
COL6A3P12111 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A3P12111 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC21.5■■□□□ 1.03
COL6A3P12111 C11orf96-202ENST00000528572 1834 ntBASIC21.5■■□□□ 1.03
COL6A3P12111 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL6A3P12111 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21.49■■□□□ 1.03
COL6A3P12111 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL6A3P12111 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL6A3P12111 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL6A3P12111 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL6A3P12111 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL6A3P12111 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL6A3P12111 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.49■■□□□ 1.03
COL6A3P12111 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.49■■□□□ 1.03
COL6A3P12111 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
COL6A3P12111 AC092053.2-201ENST00000640557 1818 ntBASIC21.48■■□□□ 1.03
COL6A3P12111 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL6A3P12111 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.48■■□□□ 1.03
COL6A3P12111 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL6A3P12111 CYP21A1P-202ENST00000354927 1481 ntBASIC21.48■■□□□ 1.03
COL6A3P12111 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
COL6A3P12111 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC21.48■■□□□ 1.03
COL6A3P12111 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC21.48■■□□□ 1.03
COL6A3P12111 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC21.48■■□□□ 1.03
COL6A3P12111 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC21.48■■□□□ 1.03
COL6A3P12111 AP003733.4-201ENST00000623785 1697 ntBASIC21.48■■□□□ 1.03
COL6A3P12111 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL6A3P12111 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL6A3P12111 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.48■■□□□ 1.03
COL6A3P12111 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC21.48■■□□□ 1.03
COL6A3P12111 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL6A3P12111 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.47■■□□□ 1.03
COL6A3P12111 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.47■■□□□ 1.03
COL6A3P12111 AC079089.2-201ENST00000531211 1277 ntBASIC21.47■■□□□ 1.03
COL6A3P12111 AC004264.1-201ENST00000608354 794 ntBASIC21.47■■□□□ 1.03
COL6A3P12111 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL6A3P12111 AL139125.2-201ENST00000623134 1869 ntBASIC21.47■■□□□ 1.03
COL6A3P12111 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL6A3P12111 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL6A3P12111 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
COL6A3P12111 AL138966.2-201ENST00000621997 464 ntBASIC21.47■■□□□ 1.03
COL6A3P12111 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL6A3P12111 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.46■■□□□ 1.03
COL6A3P12111 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL6A3P12111 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL6A3P12111 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.46■■□□□ 1.03
COL6A3P12111 AC092647.4-201ENST00000457211 535 ntBASIC21.46■■□□□ 1.03
COL6A3P12111 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC21.46■■□□□ 1.03
COL6A3P12111 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC21.46■■□□□ 1.03
COL6A3P12111 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC21.46■■□□□ 1.03
COL6A3P12111 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.46■■□□□ 1.03
COL6A3P12111 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL6A3P12111 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.46■■□□□ 1.03
COL6A3P12111 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL6A3P12111 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.46■■□□□ 1.03
COL6A3P12111 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL6A3P12111 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL6A3P12111 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL6A3P12111 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms