Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDLRP01130 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.59■□□□□ 0.73
LDLRP01130 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.59■□□□□ 0.73
LDLRP01130 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDLRP01130 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LDLRP01130 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDLRP01130 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LDLRP01130 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LDLRP01130 AL121832.2-201ENST00000610979 668 ntBASIC19.59■□□□□ 0.73
LDLRP01130 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDLRP01130 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDLRP01130 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDLRP01130 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDLRP01130 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.59■□□□□ 0.73
LDLRP01130 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDLRP01130 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.59■□□□□ 0.73
LDLRP01130 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDLRP01130 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.59■□□□□ 0.73
LDLRP01130 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.59■□□□□ 0.73
LDLRP01130 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LDLRP01130 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.59■□□□□ 0.73
LDLRP01130 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LDLRP01130 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
LDLRP01130 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
LDLRP01130 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LDLRP01130 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
LDLRP01130 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LDLRP01130 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LDLRP01130 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
LDLRP01130 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
LDLRP01130 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LDLRP01130 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.58■□□□□ 0.73
LDLRP01130 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LDLRP01130 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
LDLRP01130 AC027702.1-201ENST00000563810 1770 ntBASIC19.58■□□□□ 0.73
LDLRP01130 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LDLRP01130 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LDLRP01130 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LDLRP01130 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
LDLRP01130 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LDLRP01130 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LDLRP01130 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
LDLRP01130 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LDLRP01130 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
LDLRP01130 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LDLRP01130 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
LDLRP01130 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LDLRP01130 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LDLRP01130 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LDLRP01130 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.58■□□□□ 0.72
LDLRP01130 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LDLRP01130 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LDLRP01130 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
LDLRP01130 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LDLRP01130 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.57■□□□□ 0.72
LDLRP01130 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LDLRP01130 BX005040.4-201ENST00000637145 1518 ntBASIC19.57■□□□□ 0.72
LDLRP01130 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LDLRP01130 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LDLRP01130 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LDLRP01130 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
LDLRP01130 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LDLRP01130 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LDLRP01130 TSPY6P-201ENST00000448518 926 ntBASIC19.57■□□□□ 0.72
LDLRP01130 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.57■□□□□ 0.72
LDLRP01130 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LDLRP01130 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LDLRP01130 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
LDLRP01130 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.57■□□□□ 0.72
LDLRP01130 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LDLRP01130 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
LDLRP01130 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LDLRP01130 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LDLRP01130 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LDLRP01130 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
LDLRP01130 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LDLRP01130 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
LDLRP01130 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LDLRP01130 AC083906.2-201ENST00000511578 360 ntBASIC19.56■□□□□ 0.72
LDLRP01130 AC093827.2-201ENST00000512654 315 ntBASIC19.56■□□□□ 0.72
LDLRP01130 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.56■□□□□ 0.72
LDLRP01130 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.56■□□□□ 0.72
LDLRP01130 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.56■□□□□ 0.72
LDLRP01130 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.56■□□□□ 0.72
LDLRP01130 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LDLRP01130 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
LDLRP01130 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
LDLRP01130 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LDLRP01130 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.56■□□□□ 0.72
LDLRP01130 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LDLRP01130 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LDLRP01130 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LDLRP01130 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LDLRP01130 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LDLRP01130 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LDLRP01130 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LDLRP01130 AC020907.5-201ENST00000624372 1936 ntBASIC19.55■□□□□ 0.72
LDLRP01130 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms