Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS4BO75351 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
VPS4BO75351 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
VPS4BO75351 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
VPS4BO75351 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
VPS4BO75351 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.92■□□□□ 0.78
VPS4BO75351 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.92■□□□□ 0.78
VPS4BO75351 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.92■□□□□ 0.78
VPS4BO75351 TPRG1LP1-201ENST00000598702 760 ntBASIC19.92■□□□□ 0.78
VPS4BO75351 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
VPS4BO75351 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4BO75351 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4BO75351 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS4BO75351 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS4BO75351 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
VPS4BO75351 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4BO75351 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4BO75351 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4BO75351 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4BO75351 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.92■□□□□ 0.78
VPS4BO75351 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4BO75351 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4BO75351 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.91■□□□□ 0.78
VPS4BO75351 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4BO75351 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4BO75351 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4BO75351 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4BO75351 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4BO75351 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS4BO75351 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.91■□□□□ 0.78
VPS4BO75351 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.91■□□□□ 0.78
VPS4BO75351 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
VPS4BO75351 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
VPS4BO75351 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS4BO75351 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.91■□□□□ 0.78
VPS4BO75351 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4BO75351 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4BO75351 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4BO75351 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
VPS4BO75351 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS4BO75351 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS4BO75351 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
VPS4BO75351 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4BO75351 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4BO75351 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS4BO75351 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4BO75351 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4BO75351 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
VPS4BO75351 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS4BO75351 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS4BO75351 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4BO75351 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4BO75351 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS4BO75351 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4BO75351 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4BO75351 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS4BO75351 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4BO75351 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS4BO75351 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4BO75351 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4BO75351 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.9■□□□□ 0.78
VPS4BO75351 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS4BO75351 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS4BO75351 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4BO75351 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4BO75351 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4BO75351 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
VPS4BO75351 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
VPS4BO75351 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4BO75351 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS4BO75351 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4BO75351 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4BO75351 POU5F1P4-201ENST00000413175 1085 ntBASIC19.89■□□□□ 0.77
VPS4BO75351 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.89■□□□□ 0.77
VPS4BO75351 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4BO75351 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS4BO75351 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
VPS4BO75351 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.89■□□□□ 0.77
VPS4BO75351 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS4BO75351 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.89■□□□□ 0.77
VPS4BO75351 AC061975.6-201ENST00000579045 1553 ntBASIC19.89■□□□□ 0.77
VPS4BO75351 AC008175.2-201ENST00000612840 297 ntBASIC19.89■□□□□ 0.77
VPS4BO75351 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS4BO75351 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
VPS4BO75351 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4BO75351 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4BO75351 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4BO75351 AL512408.1-201ENST00000569378 2000 ntBASIC19.88■□□□□ 0.77
VPS4BO75351 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4BO75351 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4BO75351 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
VPS4BO75351 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4BO75351 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4BO75351 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.88■□□□□ 0.77
VPS4BO75351 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
VPS4BO75351 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.88■□□□□ 0.77
VPS4BO75351 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4BO75351 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4BO75351 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS4BO75351 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms