Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CACNA1FO60840 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CACNA1FO60840 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC25.81■■□□□ 1.72
CACNA1FO60840 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC25.81■■□□□ 1.72
CACNA1FO60840 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC25.81■■□□□ 1.72
CACNA1FO60840 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CACNA1FO60840 RER1-204ENST00000378518 522 ntTSL 3 BASIC25.81■■□□□ 1.72
CACNA1FO60840 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CACNA1FO60840 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CACNA1FO60840 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC25.81■■□□□ 1.72
CACNA1FO60840 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CACNA1FO60840 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
CACNA1FO60840 CLDN5-201ENST00000403084 2357 ntBASIC25.81■■□□□ 1.72
CACNA1FO60840 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CACNA1FO60840 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
CACNA1FO60840 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CACNA1FO60840 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC25.8■■□□□ 1.72
CACNA1FO60840 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC25.8■■□□□ 1.72
CACNA1FO60840 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC25.8■■□□□ 1.72
CACNA1FO60840 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
CACNA1FO60840 AP005212.1-201ENST00000581547 1997 ntBASIC25.8■■□□□ 1.72
CACNA1FO60840 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC25.8■■□□□ 1.72
CACNA1FO60840 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CACNA1FO60840 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
CACNA1FO60840 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CACNA1FO60840 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC25.8■■□□□ 1.72
CACNA1FO60840 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC25.8■■□□□ 1.72
CACNA1FO60840 CRK-204ENST00000574295 1391 ntTSL 5 BASIC25.79■■□□□ 1.72
CACNA1FO60840 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CACNA1FO60840 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC25.79■■□□□ 1.72
CACNA1FO60840 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC25.79■■□□□ 1.72
CACNA1FO60840 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CACNA1FO60840 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC25.79■■□□□ 1.72
CACNA1FO60840 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CACNA1FO60840 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CACNA1FO60840 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC25.79■■□□□ 1.72
CACNA1FO60840 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC25.79■■□□□ 1.72
CACNA1FO60840 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC25.79■■□□□ 1.72
CACNA1FO60840 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CACNA1FO60840 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC25.79■■□□□ 1.72
CACNA1FO60840 TREX2-204ENST00000370212 861 ntTSL 5 BASIC25.78■■□□□ 1.72
CACNA1FO60840 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
CACNA1FO60840 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC25.78■■□□□ 1.72
CACNA1FO60840 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC25.78■■□□□ 1.72
CACNA1FO60840 ADM-205ENST00000528544 586 ntTSL 2 BASIC25.78■■□□□ 1.72
CACNA1FO60840 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CACNA1FO60840 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CACNA1FO60840 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC25.78■■□□□ 1.72
CACNA1FO60840 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC25.78■■□□□ 1.72
CACNA1FO60840 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC25.78■■□□□ 1.72
CACNA1FO60840 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC25.78■■□□□ 1.72
CACNA1FO60840 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC25.78■■□□□ 1.72
CACNA1FO60840 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CACNA1FO60840 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CACNA1FO60840 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
CACNA1FO60840 POM121L13P-201ENST00000422362 380 ntBASIC25.78■■□□□ 1.72
CACNA1FO60840 HLA-B-256ENST00000639848 1089 ntBASIC25.78■■□□□ 1.72
CACNA1FO60840 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC25.78■■□□□ 1.72
CACNA1FO60840 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
CACNA1FO60840 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
CACNA1FO60840 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC25.77■■□□□ 1.72
CACNA1FO60840 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CACNA1FO60840 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC25.77■■□□□ 1.72
CACNA1FO60840 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC25.77■■□□□ 1.72
CACNA1FO60840 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC25.77■■□□□ 1.72
CACNA1FO60840 POU5F1P3-201ENST00000428824 1078 ntBASIC25.77■■□□□ 1.72
CACNA1FO60840 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CACNA1FO60840 HES2-206ENST00000489730 730 ntTSL 2 BASIC25.77■■□□□ 1.72
CACNA1FO60840 SLC29A4P2-201ENST00000504749 1089 ntBASIC25.77■■□□□ 1.72
CACNA1FO60840 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC25.77■■□□□ 1.72
CACNA1FO60840 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
CACNA1FO60840 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CACNA1FO60840 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC25.77■■□□□ 1.72
CACNA1FO60840 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC25.77■■□□□ 1.72
CACNA1FO60840 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC25.77■■□□□ 1.72
CACNA1FO60840 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.72
CACNA1FO60840 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC25.76■■□□□ 1.72
CACNA1FO60840 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC25.76■■□□□ 1.72
CACNA1FO60840 AC069544.1-201ENST00000609399 999 ntBASIC25.76■■□□□ 1.72
CACNA1FO60840 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
CACNA1FO60840 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC25.76■■□□□ 1.71
CACNA1FO60840 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CACNA1FO60840 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CACNA1FO60840 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC25.76■■□□□ 1.71
CACNA1FO60840 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
CACNA1FO60840 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
CACNA1FO60840 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC25.76■■□□□ 1.71
CACNA1FO60840 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC25.76■■□□□ 1.71
CACNA1FO60840 BRWD1-AS2-201ENST00000603064 1028 ntBASIC25.76■■□□□ 1.71
CACNA1FO60840 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
CACNA1FO60840 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC25.76■■□□□ 1.71
CACNA1FO60840 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CACNA1FO60840 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC25.75■■□□□ 1.71
CACNA1FO60840 C2orf69P4-201ENST00000565394 541 ntBASIC25.75■■□□□ 1.71
CACNA1FO60840 ITM2C-210ENST00000620962 501 ntBASIC25.75■■□□□ 1.71
CACNA1FO60840 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC25.75■■□□□ 1.71
CACNA1FO60840 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
CACNA1FO60840 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
CACNA1FO60840 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
CACNA1FO60840 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms