Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC22.93■■□□□ 1.26
MSH4O15457 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
MSH4O15457 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC22.93■■□□□ 1.26
MSH4O15457 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC22.93■■□□□ 1.26
MSH4O15457 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
MSH4O15457 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC22.93■■□□□ 1.26
MSH4O15457 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
MSH4O15457 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH4O15457 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC22.92■■□□□ 1.26
MSH4O15457 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC22.92■■□□□ 1.26
MSH4O15457 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH4O15457 MFF-205ENST00000354503 1085 ntTSL 2 BASIC22.92■■□□□ 1.26
MSH4O15457 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC22.92■■□□□ 1.26
MSH4O15457 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC22.92■■□□□ 1.26
MSH4O15457 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH4O15457 RNA5SP413-201ENST00000516373 109 ntBASIC22.92■■□□□ 1.26
MSH4O15457 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC22.92■■□□□ 1.26
MSH4O15457 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC22.92■■□□□ 1.26
MSH4O15457 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC22.92■■□□□ 1.26
MSH4O15457 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
MSH4O15457 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC22.92■■□□□ 1.26
MSH4O15457 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC22.92■■□□□ 1.26
MSH4O15457 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
MSH4O15457 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH4O15457 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC22.91■■□□□ 1.26
MSH4O15457 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH4O15457 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH4O15457 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH4O15457 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH4O15457 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
MSH4O15457 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH4O15457 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH4O15457 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH4O15457 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
MSH4O15457 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC22.91■■□□□ 1.26
MSH4O15457 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
MSH4O15457 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC22.91■■□□□ 1.26
MSH4O15457 TBCB-214ENST00000629269 413 ntTSL 5 BASIC22.91■■□□□ 1.26
MSH4O15457 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH4O15457 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH4O15457 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC22.91■■□□□ 1.26
MSH4O15457 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH4O15457 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH4O15457 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH4O15457 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC22.91■■□□□ 1.26
MSH4O15457 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC22.91■■□□□ 1.26
MSH4O15457 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC22.9■■□□□ 1.26
MSH4O15457 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC22.9■■□□□ 1.26
MSH4O15457 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
MSH4O15457 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
MSH4O15457 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
MSH4O15457 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC22.9■■□□□ 1.26
MSH4O15457 MIR4651-201ENST00000582622 73 ntBASIC22.9■■□□□ 1.26
MSH4O15457 BRWD1-AS2-201ENST00000603064 1028 ntBASIC22.9■■□□□ 1.26
MSH4O15457 INO80E-214ENST00000620599 515 ntTSL 2 BASIC22.9■■□□□ 1.26
MSH4O15457 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
MSH4O15457 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
MSH4O15457 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
MSH4O15457 ME2-216ENST00000639850 2331 ntTSL 5 BASIC22.9■■□□□ 1.26
MSH4O15457 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC22.9■■□□□ 1.26
MSH4O15457 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
MSH4O15457 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.26
MSH4O15457 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC22.89■■□□□ 1.26
MSH4O15457 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
MSH4O15457 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC22.89■■□□□ 1.25
MSH4O15457 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.25
MSH4O15457 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC22.89■■□□□ 1.25
MSH4O15457 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
MSH4O15457 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
MSH4O15457 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC22.89■■□□□ 1.25
MSH4O15457 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC22.89■■□□□ 1.25
MSH4O15457 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
MSH4O15457 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
MSH4O15457 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
MSH4O15457 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
MSH4O15457 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
MSH4O15457 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
MSH4O15457 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
MSH4O15457 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC22.88■■□□□ 1.25
MSH4O15457 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH4O15457 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH4O15457 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.88■■□□□ 1.25
MSH4O15457 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH4O15457 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC22.88■■□□□ 1.25
MSH4O15457 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH4O15457 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH4O15457 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH4O15457 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC22.88■■□□□ 1.25
MSH4O15457 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC22.88■■□□□ 1.25
MSH4O15457 HLA-B-256ENST00000639848 1089 ntBASIC22.88■■□□□ 1.25
MSH4O15457 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH4O15457 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
MSH4O15457 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC22.88■■□□□ 1.25
MSH4O15457 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC22.88■■□□□ 1.25
MSH4O15457 CRK-204ENST00000574295 1391 ntTSL 5 BASIC22.88■■□□□ 1.25
MSH4O15457 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
MSH4O15457 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
MSH4O15457 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
MSH4O15457 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
MSH4O15457 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC22.87■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms