Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A5A8TX70 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A5A8TX70 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A5A8TX70 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC15.99■□□□□ 0.15
COL6A5A8TX70 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC15.99■□□□□ 0.15
COL6A5A8TX70 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC15.99■□□□□ 0.15
COL6A5A8TX70 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A5A8TX70 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A5A8TX70 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A5A8TX70 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
COL6A5A8TX70 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL6A5A8TX70 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC15.99■□□□□ 0.15
COL6A5A8TX70 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC15.99■□□□□ 0.15
COL6A5A8TX70 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC15.99■□□□□ 0.15
COL6A5A8TX70 KRT17P6-201ENST00000453795 1220 ntBASIC15.99■□□□□ 0.15
COL6A5A8TX70 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC15.99■□□□□ 0.15
COL6A5A8TX70 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC15.99■□□□□ 0.15
COL6A5A8TX70 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
COL6A5A8TX70 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
COL6A5A8TX70 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC15.99■□□□□ 0.15
COL6A5A8TX70 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A5A8TX70 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC15.98■□□□□ 0.15
COL6A5A8TX70 FAM86EP-206ENST00000510506 987 ntBASIC15.98■□□□□ 0.15
COL6A5A8TX70 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC15.98■□□□□ 0.15
COL6A5A8TX70 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC15.98■□□□□ 0.15
COL6A5A8TX70 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A5A8TX70 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A5A8TX70 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A5A8TX70 RER1-204ENST00000378518 522 ntTSL 3 BASIC15.98■□□□□ 0.15
COL6A5A8TX70 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC15.98■□□□□ 0.15
COL6A5A8TX70 EGLN1P1-201ENST00000531623 762 ntBASIC15.98■□□□□ 0.15
COL6A5A8TX70 CKBP1-201ENST00000565489 1086 ntBASIC15.98■□□□□ 0.15
COL6A5A8TX70 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A5A8TX70 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A5A8TX70 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC15.98■□□□□ 0.15
COL6A5A8TX70 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A5A8TX70 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC15.98■□□□□ 0.15
COL6A5A8TX70 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC15.98■□□□□ 0.15
COL6A5A8TX70 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A5A8TX70 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A5A8TX70 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A5A8TX70 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A5A8TX70 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A5A8TX70 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A5A8TX70 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC15.98■□□□□ 0.15
COL6A5A8TX70 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A5A8TX70 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A5A8TX70 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC15.98■□□□□ 0.15
COL6A5A8TX70 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC15.98■□□□□ 0.15
COL6A5A8TX70 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC15.98■□□□□ 0.15
COL6A5A8TX70 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A5A8TX70 AC130371.2-201ENST00000619443 611 ntBASIC15.98■□□□□ 0.15
COL6A5A8TX70 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A5A8TX70 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A5A8TX70 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC15.97■□□□□ 0.15
COL6A5A8TX70 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A5A8TX70 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A5A8TX70 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
COL6A5A8TX70 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
COL6A5A8TX70 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A5A8TX70 PRR31-201ENST00000371629 978 ntTSL 2 BASIC15.97■□□□□ 0.15
COL6A5A8TX70 AC128688.1-201ENST00000487626 519 ntBASIC15.97■□□□□ 0.15
COL6A5A8TX70 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.97■□□□□ 0.15
COL6A5A8TX70 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC15.97■□□□□ 0.15
COL6A5A8TX70 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A5A8TX70 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC15.96■□□□□ 0.15
COL6A5A8TX70 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A5A8TX70 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A5A8TX70 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A5A8TX70 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A5A8TX70 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC15.96■□□□□ 0.15
COL6A5A8TX70 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A5A8TX70 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A5A8TX70 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A5A8TX70 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC15.96■□□□□ 0.15
COL6A5A8TX70 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A5A8TX70 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC15.96■□□□□ 0.15
COL6A5A8TX70 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A5A8TX70 AC069148.1-201ENST00000608741 768 ntBASIC15.96■□□□□ 0.15
COL6A5A8TX70 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC15.96■□□□□ 0.15
COL6A5A8TX70 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
COL6A5A8TX70 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A5A8TX70 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A5A8TX70 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A5A8TX70 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A5A8TX70 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
COL6A5A8TX70 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A5A8TX70 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.96■□□□□ 0.14
COL6A5A8TX70 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC15.96■□□□□ 0.14
COL6A5A8TX70 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.96■□□□□ 0.14
COL6A5A8TX70 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
COL6A5A8TX70 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
COL6A5A8TX70 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A5A8TX70 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A5A8TX70 KRT16P1-201ENST00000399124 1418 ntBASIC15.95■□□□□ 0.14
COL6A5A8TX70 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A5A8TX70 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC15.95■□□□□ 0.14
COL6A5A8TX70 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A5A8TX70 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC15.95■□□□□ 0.14
COL6A5A8TX70 AL671277.2-201ENST00000458060 996 ntBASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms