Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC27.41■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC27.41■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 WWOX-218ENST00000627394 894 ntTSL 5 BASIC27.41■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC27.41■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC27.41■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC27.41■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC27.4■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC27.4■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC27.4■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 BRI3-207ENST00000539286 699 ntTSL 2 BASIC27.4■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC27.4■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC27.39■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 BMP1-204ENST00000397814 836 ntTSL 4 BASIC27.39■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC27.39■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 DUSP5P2-201ENST00000426873 1033 ntBASIC27.39■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC27.39■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC27.39■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 MYCNOS-205ENST00000641950 531 ntBASIC27.39■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC27.39■■□□□ 1.98
SENP3-EIF4A1A0A087X0R7 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC27.38■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC27.38■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC27.38■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC27.37■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC27.37■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 KRT16P2-201ENST00000414673 1423 ntBASIC27.37■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC27.37■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC27.37■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 RBM17P2-201ENST00000616397 1405 ntBASIC27.37■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 PFKL-212ENST00000628044 129 ntTSL 3 BASIC27.37■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 AC007225.1-201ENST00000566331 1836 ntBASIC27.37■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC27.36■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC27.36■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC27.36■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC27.36■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC27.36■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC27.36■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC27.36■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC27.36■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC27.36■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC27.36■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC27.36■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC27.36■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 BAALC-201ENST00000297574 801 ntTSL 3 BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 MFSD11-216ENST00000590393 1141 ntBASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 MDK-213ENST00000617138 635 ntTSL 2 BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 BID-203ENST00000399765 1879 ntTSL 2 BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC27.34■■□□□ 1.97
SENP3-EIF4A1A0A087X0R7 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC27.34■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms