Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 AL136116.3-201ENST00000402907 1138 ntBASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
UBE2D4Q9Y2X8 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 TSPY26P-201ENST00000476365 1326 ntBASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 GRAMD4P2-201ENST00000423297 1097 ntBASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 AC024257.2-201ENST00000549699 147 ntBASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 AC008175.2-201ENST00000612840 297 ntBASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 AC116562.4-201ENST00000641316 2276 ntBASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC14.17□□□□□ -0.14
UBE2D4Q9Y2X8 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 POU5F1P4-201ENST00000413175 1085 ntBASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 AC008764.7-201ENST00000593779 1081 ntBASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 AL136162.1-201ENST00000607711 1078 ntBASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
UBE2D4Q9Y2X8 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
UBE2D4Q9Y2X8 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
UBE2D4Q9Y2X8 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
UBE2D4Q9Y2X8 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
UBE2D4Q9Y2X8 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
UBE2D4Q9Y2X8 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
UBE2D4Q9Y2X8 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
UBE2D4Q9Y2X8 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms