Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SIX4Q9UIU6 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SIX4Q9UIU6 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SIX4Q9UIU6 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.9■■□□□ 1.1
SIX4Q9UIU6 AC097658.1-201ENST00000475555 843 ntBASIC21.9■■□□□ 1.1
SIX4Q9UIU6 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.9■■□□□ 1.1
SIX4Q9UIU6 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.9■■□□□ 1.1
SIX4Q9UIU6 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SIX4Q9UIU6 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SIX4Q9UIU6 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.9■■□□□ 1.1
SIX4Q9UIU6 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.9■■□□□ 1.1
SIX4Q9UIU6 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SIX4Q9UIU6 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SIX4Q9UIU6 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
SIX4Q9UIU6 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SIX4Q9UIU6 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
SIX4Q9UIU6 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.1
SIX4Q9UIU6 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SIX4Q9UIU6 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
SIX4Q9UIU6 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SIX4Q9UIU6 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
SIX4Q9UIU6 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
SIX4Q9UIU6 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SIX4Q9UIU6 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SIX4Q9UIU6 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SIX4Q9UIU6 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SIX4Q9UIU6 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.89■■□□□ 1.09
SIX4Q9UIU6 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC21.89■■□□□ 1.09
SIX4Q9UIU6 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.89■■□□□ 1.09
SIX4Q9UIU6 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SIX4Q9UIU6 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
SIX4Q9UIU6 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SIX4Q9UIU6 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SIX4Q9UIU6 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
SIX4Q9UIU6 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
SIX4Q9UIU6 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 STK25-205ENST00000405883 1904 ntTSL 2 BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
SIX4Q9UIU6 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SIX4Q9UIU6 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SIX4Q9UIU6 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.87■■□□□ 1.09
SIX4Q9UIU6 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.87■■□□□ 1.09
SIX4Q9UIU6 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SIX4Q9UIU6 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.87■■□□□ 1.09
SIX4Q9UIU6 KRT18P6-201ENST00000555540 1265 ntBASIC21.87■■□□□ 1.09
SIX4Q9UIU6 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.87■■□□□ 1.09
SIX4Q9UIU6 C2orf69P4-201ENST00000565394 541 ntBASIC21.87■■□□□ 1.09
SIX4Q9UIU6 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.87■■□□□ 1.09
SIX4Q9UIU6 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.87■■□□□ 1.09
SIX4Q9UIU6 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.87■■□□□ 1.09
SIX4Q9UIU6 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.87■■□□□ 1.09
SIX4Q9UIU6 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
SIX4Q9UIU6 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
SIX4Q9UIU6 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.86■■□□□ 1.09
SIX4Q9UIU6 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.86■■□□□ 1.09
SIX4Q9UIU6 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SIX4Q9UIU6 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SIX4Q9UIU6 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SIX4Q9UIU6 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SIX4Q9UIU6 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SIX4Q9UIU6 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.86■■□□□ 1.09
SIX4Q9UIU6 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SIX4Q9UIU6 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.86■■□□□ 1.09
SIX4Q9UIU6 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SIX4Q9UIU6 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.85■■□□□ 1.09
SIX4Q9UIU6 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SIX4Q9UIU6 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
SIX4Q9UIU6 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SIX4Q9UIU6 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
SIX4Q9UIU6 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.85■■□□□ 1.09
SIX4Q9UIU6 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.85■■□□□ 1.09
SIX4Q9UIU6 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.85■■□□□ 1.09
SIX4Q9UIU6 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.85■■□□□ 1.09
SIX4Q9UIU6 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.85■■□□□ 1.09
SIX4Q9UIU6 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SIX4Q9UIU6 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.85■■□□□ 1.09
SIX4Q9UIU6 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
SIX4Q9UIU6 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
SIX4Q9UIU6 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SIX4Q9UIU6 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms