Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CUEDC1Q9NWM3 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.72■□□□□ 0.75
CUEDC1Q9NWM3 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.72■□□□□ 0.75
CUEDC1Q9NWM3 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CUEDC1Q9NWM3 AC105036.2-201ENST00000569468 176 ntBASIC19.72■□□□□ 0.75
CUEDC1Q9NWM3 AC133552.2-202ENST00000575694 574 ntBASIC19.72■□□□□ 0.75
CUEDC1Q9NWM3 AL121832.2-201ENST00000610979 668 ntBASIC19.72■□□□□ 0.75
CUEDC1Q9NWM3 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CUEDC1Q9NWM3 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CUEDC1Q9NWM3 CYP21A1P-202ENST00000354927 1481 ntBASIC19.72■□□□□ 0.75
CUEDC1Q9NWM3 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CUEDC1Q9NWM3 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CUEDC1Q9NWM3 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.72■□□□□ 0.75
CUEDC1Q9NWM3 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CUEDC1Q9NWM3 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CUEDC1Q9NWM3 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
CUEDC1Q9NWM3 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CUEDC1Q9NWM3 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CUEDC1Q9NWM3 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.71■□□□□ 0.75
CUEDC1Q9NWM3 FAM201B-201ENST00000458407 597 ntBASIC19.71■□□□□ 0.75
CUEDC1Q9NWM3 AF201337.1-201ENST00000520239 748 ntBASIC19.71■□□□□ 0.75
CUEDC1Q9NWM3 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.71■□□□□ 0.75
CUEDC1Q9NWM3 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CUEDC1Q9NWM3 AC007225.1-201ENST00000566331 1836 ntBASIC19.71■□□□□ 0.75
CUEDC1Q9NWM3 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CUEDC1Q9NWM3 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
CUEDC1Q9NWM3 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CUEDC1Q9NWM3 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CUEDC1Q9NWM3 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 AL121603.2-201ENST00000557373 2117 ntBASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 AL355472.2-201ENST00000422958 438 ntBASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 AC093827.2-201ENST00000512654 315 ntBASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
CUEDC1Q9NWM3 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 AC010980.2-201ENST00000587099 1412 ntBASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 AC083906.2-201ENST00000511578 360 ntBASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 MIR2861-201ENST00000636310 90 ntBASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.69■□□□□ 0.74
CUEDC1Q9NWM3 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.68■□□□□ 0.74
CUEDC1Q9NWM3 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CUEDC1Q9NWM3 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CUEDC1Q9NWM3 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CUEDC1Q9NWM3 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CUEDC1Q9NWM3 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CUEDC1Q9NWM3 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CUEDC1Q9NWM3 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CUEDC1Q9NWM3 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms