Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SIX2Q9NPC8 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.97■■□□□ 1.11
SIX2Q9NPC8 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SIX2Q9NPC8 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.97■■□□□ 1.11
SIX2Q9NPC8 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.97■■□□□ 1.11
SIX2Q9NPC8 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SIX2Q9NPC8 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SIX2Q9NPC8 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
SIX2Q9NPC8 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 CNN2P6-201ENST00000439038 900 ntBASIC21.96■■□□□ 1.11
SIX2Q9NPC8 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 AL591742.1-201ENST00000604433 565 ntBASIC21.96■■□□□ 1.11
SIX2Q9NPC8 FAM21FP-204ENST00000608637 956 ntBASIC21.96■■□□□ 1.11
SIX2Q9NPC8 AC011767.1-201ENST00000617410 1153 ntBASIC21.96■■□□□ 1.11
SIX2Q9NPC8 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 SMG8-203ENST00000578922 2178 ntBASIC21.96■■□□□ 1.11
SIX2Q9NPC8 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SIX2Q9NPC8 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.95■■□□□ 1.1
SIX2Q9NPC8 KRT18P11-201ENST00000435214 1283 ntBASIC21.95■■□□□ 1.1
SIX2Q9NPC8 AL162430.1-201ENST00000480705 870 ntBASIC21.95■■□□□ 1.1
SIX2Q9NPC8 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 DUX4L16-201ENST00000555130 1264 ntBASIC21.95■■□□□ 1.1
SIX2Q9NPC8 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
SIX2Q9NPC8 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.94■■□□□ 1.1
SIX2Q9NPC8 AC013268.1-206ENST00000638368 961 ntBASIC21.94■■□□□ 1.1
SIX2Q9NPC8 AC112229.1-201ENST00000639295 961 ntBASIC21.94■■□□□ 1.1
SIX2Q9NPC8 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SIX2Q9NPC8 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.93■■□□□ 1.1
SIX2Q9NPC8 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
SIX2Q9NPC8 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SIX2Q9NPC8 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.93■■□□□ 1.1
SIX2Q9NPC8 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SIX2Q9NPC8 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
SIX2Q9NPC8 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SIX2Q9NPC8 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.93■■□□□ 1.1
SIX2Q9NPC8 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SIX2Q9NPC8 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.93■■□□□ 1.1
SIX2Q9NPC8 PCDHAC2-203ENST00000615316 3011 ntBASIC21.93■■□□□ 1.1
SIX2Q9NPC8 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SIX2Q9NPC8 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms