Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 KRT18P11-201ENST00000435214 1283 ntBASIC21.08■□□□□ 0.97
PCDH9Q9HC56 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.08■□□□□ 0.97
PCDH9Q9HC56 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
PCDH9Q9HC56 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PCDH9Q9HC56 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.08■□□□□ 0.96
PCDH9Q9HC56 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.08■□□□□ 0.96
PCDH9Q9HC56 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 AC006015.1-201ENST00000429970 570 ntBASIC21.07■□□□□ 0.96
PCDH9Q9HC56 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 SLC7A5P1-201ENST00000568957 537 ntBASIC21.07■□□□□ 0.96
PCDH9Q9HC56 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 MYCNOS-205ENST00000641950 531 ntBASIC21.07■□□□□ 0.96
PCDH9Q9HC56 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PCDH9Q9HC56 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 AC099778.1-201ENST00000568593 1911 ntBASIC21.06■□□□□ 0.96
PCDH9Q9HC56 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 AC092720.2-201ENST00000602388 1665 ntBASIC21.06■□□□□ 0.96
PCDH9Q9HC56 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
PCDH9Q9HC56 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCDH9Q9HC56 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCDH9Q9HC56 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.05■□□□□ 0.96
PCDH9Q9HC56 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCDH9Q9HC56 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCDH9Q9HC56 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PCDH9Q9HC56 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.05■□□□□ 0.96
PCDH9Q9HC56 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.05■□□□□ 0.96
PCDH9Q9HC56 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.05■□□□□ 0.96
PCDH9Q9HC56 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PCDH9Q9HC56 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.05■□□□□ 0.96
PCDH9Q9HC56 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PCDH9Q9HC56 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
PCDH9Q9HC56 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCDH9Q9HC56 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCDH9Q9HC56 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.05■□□□□ 0.96
PCDH9Q9HC56 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 IKBKGP1-201ENST00000612193 1073 ntBASIC21.04■□□□□ 0.96
PCDH9Q9HC56 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
PCDH9Q9HC56 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms