Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
RTF1Q92541 REXO2-208ENST00000539754 791 ntTSL 2 BASIC26.7■■□□□ 1.86
RTF1Q92541 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC26.7■■□□□ 1.86
RTF1Q92541 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
RTF1Q92541 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
RTF1Q92541 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
RTF1Q92541 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
RTF1Q92541 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC26.69■■□□□ 1.86
RTF1Q92541 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
RTF1Q92541 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
RTF1Q92541 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC26.69■■□□□ 1.86
RTF1Q92541 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
RTF1Q92541 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
RTF1Q92541 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC26.69■■□□□ 1.86
RTF1Q92541 AC128676.1-201ENST00000454392 318 ntBASIC26.69■■□□□ 1.86
RTF1Q92541 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC26.69■■□□□ 1.86
RTF1Q92541 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
RTF1Q92541 AC079834.2-201ENST00000609776 1949 ntBASIC26.69■■□□□ 1.86
RTF1Q92541 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
RTF1Q92541 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
RTF1Q92541 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC26.68■■□□□ 1.86
RTF1Q92541 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
RTF1Q92541 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
RTF1Q92541 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC26.68■■□□□ 1.86
RTF1Q92541 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC26.68■■□□□ 1.86
RTF1Q92541 OR2A1-AS1-207ENST00000486094 819 ntBASIC26.68■■□□□ 1.86
RTF1Q92541 UNC93B4-201ENST00000505679 747 ntBASIC26.68■■□□□ 1.86
RTF1Q92541 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
RTF1Q92541 AC008403.3-201ENST00000598924 454 ntBASIC26.68■■□□□ 1.86
RTF1Q92541 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC26.68■■□□□ 1.86
RTF1Q92541 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
RTF1Q92541 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
RTF1Q92541 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
RTF1Q92541 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
RTF1Q92541 WWC2-AS2-201ENST00000578387 2183 ntBASIC26.67■■□□□ 1.86
RTF1Q92541 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
RTF1Q92541 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
RTF1Q92541 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
RTF1Q92541 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC26.67■■□□□ 1.86
RTF1Q92541 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
RTF1Q92541 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
RTF1Q92541 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC26.67■■□□□ 1.86
RTF1Q92541 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC26.67■■□□□ 1.86
RTF1Q92541 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
RTF1Q92541 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
RTF1Q92541 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
RTF1Q92541 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
RTF1Q92541 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
RTF1Q92541 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
RTF1Q92541 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC26.67■■□□□ 1.86
RTF1Q92541 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
RTF1Q92541 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC26.66■■□□□ 1.86
RTF1Q92541 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC26.66■■□□□ 1.86
RTF1Q92541 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
RTF1Q92541 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
RTF1Q92541 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC26.66■■□□□ 1.86
RTF1Q92541 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC26.66■■□□□ 1.86
RTF1Q92541 SLC29A4P2-201ENST00000504749 1089 ntBASIC26.66■■□□□ 1.86
RTF1Q92541 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
RTF1Q92541 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
RTF1Q92541 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
RTF1Q92541 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
RTF1Q92541 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
RTF1Q92541 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
RTF1Q92541 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
RTF1Q92541 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
RTF1Q92541 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
RTF1Q92541 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
RTF1Q92541 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC26.65■■□□□ 1.86
RTF1Q92541 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
RTF1Q92541 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC26.65■■□□□ 1.86
RTF1Q92541 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
RTF1Q92541 SOX15-203ENST00000570788 1093 ntBASIC26.65■■□□□ 1.86
RTF1Q92541 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
RTF1Q92541 AF106564.1-201ENST00000607058 2553 ntBASIC26.65■■□□□ 1.86
RTF1Q92541 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC26.65■■□□□ 1.86
RTF1Q92541 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
RTF1Q92541 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
RTF1Q92541 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
RTF1Q92541 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC26.65■■□□□ 1.86
RTF1Q92541 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
RTF1Q92541 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
RTF1Q92541 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
RTF1Q92541 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC26.64■■□□□ 1.86
RTF1Q92541 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC26.64■■□□□ 1.86
RTF1Q92541 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC26.64■■□□□ 1.86
RTF1Q92541 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
RTF1Q92541 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
RTF1Q92541 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC26.64■■□□□ 1.86
RTF1Q92541 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC26.64■■□□□ 1.86
RTF1Q92541 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC26.64■■□□□ 1.86
RTF1Q92541 MIR2861-201ENST00000636310 90 ntBASIC26.64■■□□□ 1.86
RTF1Q92541 AC073648.6-201ENST00000641589 218 ntBASIC26.64■■□□□ 1.86
RTF1Q92541 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC26.64■■□□□ 1.86
RTF1Q92541 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
RTF1Q92541 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.85
RTF1Q92541 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC26.64■■□□□ 1.85
RTF1Q92541 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC26.64■■□□□ 1.85
RTF1Q92541 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.85
RTF1Q92541 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms