Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLHC1Q8NHS4 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 AL162377.1-201ENST00000618844 1793 ntBASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CLHC1Q8NHS4 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 AC099778.1-201ENST00000568593 1911 ntBASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 AC092720.2-201ENST00000602388 1665 ntBASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.55■□□□□ 0.72
CLHC1Q8NHS4 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 AC116050.2-201ENST00000612102 1779 ntBASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLHC1Q8NHS4 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLHC1Q8NHS4 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLHC1Q8NHS4 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.52■□□□□ 0.72
CLHC1Q8NHS4 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLHC1Q8NHS4 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.52■□□□□ 0.72
CLHC1Q8NHS4 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLHC1Q8NHS4 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLHC1Q8NHS4 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CLHC1Q8NHS4 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLHC1Q8NHS4 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.52■□□□□ 0.72
CLHC1Q8NHS4 KRT18P61-201ENST00000585825 1298 ntBASIC19.52■□□□□ 0.72
CLHC1Q8NHS4 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLHC1Q8NHS4 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CLHC1Q8NHS4 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.52■□□□□ 0.71
CLHC1Q8NHS4 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CLHC1Q8NHS4 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.52■□□□□ 0.71
CLHC1Q8NHS4 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLHC1Q8NHS4 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CLHC1Q8NHS4 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLHC1Q8NHS4 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CLHC1Q8NHS4 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms