Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
RTL3Q8N8U3 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.95■□□□□ 0.95
RTL3Q8N8U3 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.95
RTL3Q8N8U3 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
RTL3Q8N8U3 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RTL3Q8N8U3 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RTL3Q8N8U3 KRT17P1-201ENST00000399211 1546 ntBASIC20.95■□□□□ 0.94
RTL3Q8N8U3 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RTL3Q8N8U3 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RTL3Q8N8U3 SLC29A4P1-201ENST00000398760 971 ntBASIC20.95■□□□□ 0.94
RTL3Q8N8U3 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.95■□□□□ 0.94
RTL3Q8N8U3 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.95■□□□□ 0.94
RTL3Q8N8U3 AL109923.1-201ENST00000618799 583 ntBASIC20.95■□□□□ 0.94
RTL3Q8N8U3 AC105020.6-201ENST00000621523 1217 ntBASIC20.95■□□□□ 0.94
RTL3Q8N8U3 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RTL3Q8N8U3 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RTL3Q8N8U3 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RTL3Q8N8U3 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RTL3Q8N8U3 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RTL3Q8N8U3 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RTL3Q8N8U3 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RTL3Q8N8U3 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
RTL3Q8N8U3 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RTL3Q8N8U3 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
RTL3Q8N8U3 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
RTL3Q8N8U3 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.94■□□□□ 0.94
RTL3Q8N8U3 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RTL3Q8N8U3 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
RTL3Q8N8U3 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RTL3Q8N8U3 MIPEPP3-201ENST00000412105 444 ntBASIC20.94■□□□□ 0.94
RTL3Q8N8U3 BX276092.2-201ENST00000417668 665 ntBASIC20.94■□□□□ 0.94
RTL3Q8N8U3 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.94■□□□□ 0.94
RTL3Q8N8U3 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
RTL3Q8N8U3 AC104771.1-201ENST00000603335 964 ntBASIC20.94■□□□□ 0.94
RTL3Q8N8U3 AL589743.5-201ENST00000616611 1050 ntBASIC20.94■□□□□ 0.94
RTL3Q8N8U3 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
RTL3Q8N8U3 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.94■□□□□ 0.94
RTL3Q8N8U3 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
RTL3Q8N8U3 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RTL3Q8N8U3 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RTL3Q8N8U3 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RTL3Q8N8U3 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
RTL3Q8N8U3 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 ID1-201ENST00000376105 1233 ntBASIC20.92■□□□□ 0.94
RTL3Q8N8U3 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 HLA-L-209ENST00000420110 1011 ntBASIC20.92■□□□□ 0.94
RTL3Q8N8U3 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
RTL3Q8N8U3 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTL3Q8N8U3 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTL3Q8N8U3 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTL3Q8N8U3 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTL3Q8N8U3 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTL3Q8N8U3 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTL3Q8N8U3 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
RTL3Q8N8U3 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
RTL3Q8N8U3 LSM12P1-201ENST00000411836 588 ntBASIC20.91■□□□□ 0.94
RTL3Q8N8U3 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RTL3Q8N8U3 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RTL3Q8N8U3 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.9■□□□□ 0.94
RTL3Q8N8U3 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
RTL3Q8N8U3 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms