Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.54■□□□□ 0.88
HDDC3Q8N4P3 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDDC3Q8N4P3 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.54■□□□□ 0.88
HDDC3Q8N4P3 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDDC3Q8N4P3 Z98882.1-201ENST00000622160 2253 ntBASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 MIR1224-201ENST00000408193 85 ntBASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HDDC3Q8N4P3 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDDC3Q8N4P3 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
HDDC3Q8N4P3 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDDC3Q8N4P3 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDDC3Q8N4P3 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.52■□□□□ 0.88
HDDC3Q8N4P3 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDDC3Q8N4P3 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.52■□□□□ 0.88
HDDC3Q8N4P3 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.52■□□□□ 0.88
HDDC3Q8N4P3 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.52■□□□□ 0.88
HDDC3Q8N4P3 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HDDC3Q8N4P3 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
HDDC3Q8N4P3 AL356652.1-201ENST00000615962 565 ntBASIC20.52■□□□□ 0.88
HDDC3Q8N4P3 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.52■□□□□ 0.88
HDDC3Q8N4P3 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDDC3Q8N4P3 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.52■□□□□ 0.87
HDDC3Q8N4P3 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 SOX15-203ENST00000570788 1093 ntBASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
HDDC3Q8N4P3 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HDDC3Q8N4P3 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 AC011484.1-201ENST00000377652 1995 ntBASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 FAM210CP-201ENST00000445714 574 ntBASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 REXO1L12P-201ENST00000622156 912 ntBASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms