Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PRPF39Q86UA1 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PRPF39Q86UA1 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
PRPF39Q86UA1 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PRPF39Q86UA1 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PRPF39Q86UA1 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
PRPF39Q86UA1 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 AC073314.1-201ENST00000568729 2216 ntBASIC21.09■□□□□ 0.97
PRPF39Q86UA1 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 AC105036.2-201ENST00000569468 176 ntBASIC21.09■□□□□ 0.97
PRPF39Q86UA1 AC133552.2-202ENST00000575694 574 ntBASIC21.09■□□□□ 0.97
PRPF39Q86UA1 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF39Q86UA1 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
PRPF39Q86UA1 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
PRPF39Q86UA1 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
PRPF39Q86UA1 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
PRPF39Q86UA1 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.96
PRPF39Q86UA1 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.96
PRPF39Q86UA1 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
PRPF39Q86UA1 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PRPF39Q86UA1 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
PRPF39Q86UA1 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
PRPF39Q86UA1 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PRPF39Q86UA1 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PRPF39Q86UA1 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
PRPF39Q86UA1 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.07■□□□□ 0.96
PRPF39Q86UA1 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.07■□□□□ 0.96
PRPF39Q86UA1 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
PRPF39Q86UA1 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PRPF39Q86UA1 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PRPF39Q86UA1 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PRPF39Q86UA1 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PRPF39Q86UA1 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.07■□□□□ 0.96
PRPF39Q86UA1 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PRPF39Q86UA1 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
PRPF39Q86UA1 AP005212.1-201ENST00000581547 1997 ntBASIC21.06■□□□□ 0.96
PRPF39Q86UA1 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PRPF39Q86UA1 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PRPF39Q86UA1 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PRPF39Q86UA1 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PRPF39Q86UA1 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PRPF39Q86UA1 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
PRPF39Q86UA1 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PRPF39Q86UA1 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PRPF39Q86UA1 GUSBP6-202ENST00000438529 1198 ntBASIC21.06■□□□□ 0.96
PRPF39Q86UA1 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.06■□□□□ 0.96
PRPF39Q86UA1 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.06■□□□□ 0.96
PRPF39Q86UA1 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms