Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 AC092667.1-201ENST00000434301 2586 ntBASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 AP005212.1-201ENST00000581547 1997 ntBASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.93■□□□□ 0.78
PTCHD3Q3KNS1 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 GUSBP6-202ENST00000438529 1198 ntBASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 AC105036.2-201ENST00000569468 176 ntBASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 LINC01521-201ENST00000504184 1943 ntBASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD3Q3KNS1 AL121603.2-201ENST00000557373 2117 ntBASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 SLC29A4P1-201ENST00000398760 971 ntBASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 CDV3P1-201ENST00000471403 739 ntBASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 AF201337.1-201ENST00000520239 748 ntBASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 AC068338.2-201ENST00000563278 1430 ntBASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.91■□□□□ 0.78
PTCHD3Q3KNS1 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 CYP2T1P-201ENST00000432607 1285 ntBASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms