Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
RAE1P78406 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.41■□□□□ 0.7
RAE1P78406 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RAE1P78406 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RAE1P78406 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.41■□□□□ 0.7
RAE1P78406 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RAE1P78406 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RAE1P78406 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RAE1P78406 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
RAE1P78406 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RAE1P78406 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.41■□□□□ 0.7
RAE1P78406 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
RAE1P78406 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAE1P78406 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RAE1P78406 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAE1P78406 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.4■□□□□ 0.7
RAE1P78406 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAE1P78406 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RAE1P78406 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAE1P78406 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAE1P78406 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.4■□□□□ 0.7
RAE1P78406 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
RAE1P78406 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAE1P78406 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.4■□□□□ 0.7
RAE1P78406 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
RAE1P78406 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.4■□□□□ 0.7
RAE1P78406 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.4■□□□□ 0.7
RAE1P78406 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAE1P78406 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAE1P78406 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
RAE1P78406 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
RAE1P78406 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAE1P78406 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAE1P78406 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.39■□□□□ 0.7
RAE1P78406 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RAE1P78406 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RAE1P78406 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RAE1P78406 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.39■□□□□ 0.69
RAE1P78406 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RAE1P78406 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
RAE1P78406 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.39■□□□□ 0.69
RAE1P78406 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
RAE1P78406 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.39■□□□□ 0.69
RAE1P78406 KRT18P11-201ENST00000435214 1283 ntBASIC19.39■□□□□ 0.69
RAE1P78406 AL591742.1-201ENST00000604433 565 ntBASIC19.39■□□□□ 0.69
RAE1P78406 AC016405.3-201ENST00000607710 860 ntBASIC19.39■□□□□ 0.69
RAE1P78406 FAM21FP-204ENST00000608637 956 ntBASIC19.39■□□□□ 0.69
RAE1P78406 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.39■□□□□ 0.69
RAE1P78406 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
RAE1P78406 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RAE1P78406 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.39■□□□□ 0.69
RAE1P78406 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RAE1P78406 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RAE1P78406 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.39■□□□□ 0.69
RAE1P78406 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.39■□□□□ 0.69
RAE1P78406 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
RAE1P78406 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
RAE1P78406 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.39■□□□□ 0.69
RAE1P78406 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RAE1P78406 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RAE1P78406 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.38■□□□□ 0.69
RAE1P78406 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
RAE1P78406 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RAE1P78406 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.38■□□□□ 0.69
RAE1P78406 AC007322.4-201ENST00000509611 723 ntBASIC19.38■□□□□ 0.69
RAE1P78406 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.38■□□□□ 0.69
RAE1P78406 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RAE1P78406 SMG8-203ENST00000578922 2178 ntBASIC19.38■□□□□ 0.69
RAE1P78406 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
RAE1P78406 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.38■□□□□ 0.69
RAE1P78406 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RAE1P78406 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RAE1P78406 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.38■□□□□ 0.69
RAE1P78406 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.38■□□□□ 0.69
RAE1P78406 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
RAE1P78406 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RAE1P78406 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.37■□□□□ 0.69
RAE1P78406 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RAE1P78406 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RAE1P78406 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.37■□□□□ 0.69
RAE1P78406 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RAE1P78406 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
RAE1P78406 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RAE1P78406 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
RAE1P78406 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RAE1P78406 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.37■□□□□ 0.69
RAE1P78406 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
RAE1P78406 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.37■□□□□ 0.69
RAE1P78406 AC006015.1-201ENST00000429970 570 ntBASIC19.37■□□□□ 0.69
RAE1P78406 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
RAE1P78406 CNN2P6-201ENST00000439038 900 ntBASIC19.37■□□□□ 0.69
RAE1P78406 AL162430.1-201ENST00000480705 870 ntBASIC19.37■□□□□ 0.69
RAE1P78406 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.37■□□□□ 0.69
RAE1P78406 DUX4L16-201ENST00000555130 1264 ntBASIC19.37■□□□□ 0.69
RAE1P78406 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.37■□□□□ 0.69
RAE1P78406 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.37■□□□□ 0.69
RAE1P78406 AC013268.1-206ENST00000638368 961 ntBASIC19.37■□□□□ 0.69
RAE1P78406 AC112229.1-201ENST00000639295 961 ntBASIC19.37■□□□□ 0.69
RAE1P78406 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RAE1P78406 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms