Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 LINC01006-201ENST00000333319 2292 ntBASIC18.22■□□□□ 0.51
CLRN1P58418 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.22■□□□□ 0.51
CLRN1P58418 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLRN1P58418 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLRN1P58418 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLRN1P58418 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLRN1P58418 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLRN1P58418 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLRN1P58418 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN1P58418 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CLRN1P58418 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN1P58418 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CLRN1P58418 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CLRN1P58418 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN1P58418 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN1P58418 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN1P58418 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.21■□□□□ 0.51
CLRN1P58418 MIR935-201ENST00000401179 91 ntBASIC18.21■□□□□ 0.51
CLRN1P58418 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN1P58418 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CLRN1P58418 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN1P58418 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.21■□□□□ 0.51
CLRN1P58418 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN1P58418 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CLRN1P58418 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CLRN1P58418 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN1P58418 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CLRN1P58418 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN1P58418 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN1P58418 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN1P58418 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.21■□□□□ 0.51
CLRN1P58418 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
CLRN1P58418 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
CLRN1P58418 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLRN1P58418 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.2■□□□□ 0.5
CLRN1P58418 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLRN1P58418 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLRN1P58418 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.2■□□□□ 0.5
CLRN1P58418 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CLRN1P58418 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.2■□□□□ 0.5
CLRN1P58418 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.2■□□□□ 0.5
CLRN1P58418 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.2■□□□□ 0.5
CLRN1P58418 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
CLRN1P58418 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.2■□□□□ 0.5
CLRN1P58418 AL591742.1-201ENST00000604433 565 ntBASIC18.2■□□□□ 0.5
CLRN1P58418 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLRN1P58418 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.2■□□□□ 0.5
CLRN1P58418 AC013268.1-206ENST00000638368 961 ntBASIC18.2■□□□□ 0.5
CLRN1P58418 AC112229.1-201ENST00000639295 961 ntBASIC18.2■□□□□ 0.5
CLRN1P58418 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLRN1P58418 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLRN1P58418 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.2■□□□□ 0.5
CLRN1P58418 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.2■□□□□ 0.5
CLRN1P58418 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLRN1P58418 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CLRN1P58418 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.2■□□□□ 0.5
CLRN1P58418 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLRN1P58418 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CLRN1P58418 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
CLRN1P58418 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLRN1P58418 AC073314.1-201ENST00000568729 2216 ntBASIC18.19■□□□□ 0.5
CLRN1P58418 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLRN1P58418 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLRN1P58418 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.19■□□□□ 0.5
CLRN1P58418 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLRN1P58418 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLRN1P58418 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.19■□□□□ 0.5
CLRN1P58418 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CLRN1P58418 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLRN1P58418 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLRN1P58418 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLRN1P58418 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.19■□□□□ 0.5
CLRN1P58418 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
CLRN1P58418 MFSD11-216ENST00000590393 1141 ntBASIC18.19■□□□□ 0.5
CLRN1P58418 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CLRN1P58418 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLRN1P58418 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
CLRN1P58418 AP005212.1-201ENST00000581547 1997 ntBASIC18.19■□□□□ 0.5
CLRN1P58418 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN1P58418 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CLRN1P58418 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CLRN1P58418 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CLRN1P58418 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.18■□□□□ 0.5
CLRN1P58418 GABARAPL3-202ENST00000624044 1851 ntBASIC18.18■□□□□ 0.5
CLRN1P58418 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN1P58418 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.18■□□□□ 0.5
CLRN1P58418 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN1P58418 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN1P58418 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.18■□□□□ 0.5
CLRN1P58418 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.18■□□□□ 0.5
CLRN1P58418 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN1P58418 FAM21FP-204ENST00000608637 956 ntBASIC18.18■□□□□ 0.5
CLRN1P58418 MIR2861-201ENST00000636310 90 ntBASIC18.18■□□□□ 0.5
CLRN1P58418 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN1P58418 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN1P58418 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CLRN1P58418 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN1P58418 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CLRN1P58418 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CLRN1P58418 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms