Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
VCPP55072 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
VCPP55072 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
VCPP55072 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
VCPP55072 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.82■■□□□ 1.08
VCPP55072 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.82■■□□□ 1.08
VCPP55072 AL049796.1-201ENST00000565336 1766 ntBASIC21.82■■□□□ 1.08
VCPP55072 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.82■■□□□ 1.08
VCPP55072 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VCPP55072 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
VCPP55072 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.82■■□□□ 1.08
VCPP55072 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.82■■□□□ 1.08
VCPP55072 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VCPP55072 LINC01023-201ENST00000606054 436 ntBASIC21.82■■□□□ 1.08
VCPP55072 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.82■■□□□ 1.08
VCPP55072 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VCPP55072 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.82■■□□□ 1.08
VCPP55072 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VCPP55072 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VCPP55072 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VCPP55072 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VCPP55072 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VCPP55072 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VCPP55072 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VCPP55072 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VCPP55072 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VCPP55072 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
VCPP55072 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
VCPP55072 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
VCPP55072 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.81■■□□□ 1.08
VCPP55072 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.81■■□□□ 1.08
VCPP55072 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.81■■□□□ 1.08
VCPP55072 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.81■■□□□ 1.08
VCPP55072 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VCPP55072 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.81■■□□□ 1.08
VCPP55072 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
VCPP55072 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.81■■□□□ 1.08
VCPP55072 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VCPP55072 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.81■■□□□ 1.08
VCPP55072 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VCPP55072 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.81■■□□□ 1.08
VCPP55072 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VCPP55072 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.8■■□□□ 1.08
VCPP55072 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VCPP55072 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
VCPP55072 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.8■■□□□ 1.08
VCPP55072 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
VCPP55072 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.8■■□□□ 1.08
VCPP55072 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.8■■□□□ 1.08
VCPP55072 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VCPP55072 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
VCPP55072 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VCPP55072 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
VCPP55072 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VCPP55072 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
VCPP55072 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
VCPP55072 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.8■■□□□ 1.08
VCPP55072 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.8■■□□□ 1.08
VCPP55072 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VCPP55072 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VCPP55072 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
VCPP55072 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VCPP55072 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VCPP55072 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VCPP55072 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.79■■□□□ 1.08
VCPP55072 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VCPP55072 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
VCPP55072 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VCPP55072 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VCPP55072 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.79■■□□□ 1.08
VCPP55072 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
VCPP55072 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VCPP55072 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VCPP55072 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
VCPP55072 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
VCPP55072 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
VCPP55072 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VCPP55072 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VCPP55072 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
VCPP55072 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VCPP55072 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
VCPP55072 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VCPP55072 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
VCPP55072 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCPP55072 AC061975.6-201ENST00000579045 1553 ntBASIC21.78■■□□□ 1.08
VCPP55072 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCPP55072 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCPP55072 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VCPP55072 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VCPP55072 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCPP55072 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCPP55072 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC21.78■■□□□ 1.08
VCPP55072 SNORA78-201ENST00000459373 127 ntBASIC21.78■■□□□ 1.08
VCPP55072 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.78■■□□□ 1.08
VCPP55072 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VCPP55072 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.78■■□□□ 1.08
VCPP55072 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
VCPP55072 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
VCPP55072 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCPP55072 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms