Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RFX3P48380 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
RFX3P48380 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
RFX3P48380 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.12■□□□□ 0.65
RFX3P48380 RBM17P2-201ENST00000616397 1405 ntBASIC19.12■□□□□ 0.65
RFX3P48380 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
RFX3P48380 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.12■□□□□ 0.65
RFX3P48380 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
RFX3P48380 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
RFX3P48380 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.12■□□□□ 0.65
RFX3P48380 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RFX3P48380 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RFX3P48380 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
RFX3P48380 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RFX3P48380 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
RFX3P48380 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
RFX3P48380 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RFX3P48380 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
RFX3P48380 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RFX3P48380 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
RFX3P48380 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
RFX3P48380 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
RFX3P48380 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RFX3P48380 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.11■□□□□ 0.65
RFX3P48380 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
RFX3P48380 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RFX3P48380 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RFX3P48380 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFX3P48380 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.11■□□□□ 0.65
RFX3P48380 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFX3P48380 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFX3P48380 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.11■□□□□ 0.65
RFX3P48380 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.11■□□□□ 0.65
RFX3P48380 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.11■□□□□ 0.65
RFX3P48380 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RFX3P48380 IKBKGP1-201ENST00000612193 1073 ntBASIC19.11■□□□□ 0.65
RFX3P48380 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.11■□□□□ 0.65
RFX3P48380 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.11■□□□□ 0.65
RFX3P48380 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFX3P48380 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFX3P48380 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFX3P48380 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFX3P48380 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
RFX3P48380 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RFX3P48380 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RFX3P48380 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.1■□□□□ 0.65
RFX3P48380 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RFX3P48380 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.1■□□□□ 0.65
RFX3P48380 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFX3P48380 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFX3P48380 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFX3P48380 AL157384.1-201ENST00000445995 2473 ntBASIC19.1■□□□□ 0.65
RFX3P48380 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
RFX3P48380 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFX3P48380 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
RFX3P48380 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFX3P48380 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.1■□□□□ 0.65
RFX3P48380 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.1■□□□□ 0.65
RFX3P48380 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.1■□□□□ 0.65
RFX3P48380 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RFX3P48380 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
RFX3P48380 SLC7A5P1-201ENST00000568957 537 ntBASIC19.1■□□□□ 0.65
RFX3P48380 AC011767.1-201ENST00000617410 1153 ntBASIC19.1■□□□□ 0.65
RFX3P48380 AC010536.3-201ENST00000620306 533 ntBASIC19.1■□□□□ 0.65
RFX3P48380 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RFX3P48380 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
RFX3P48380 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
RFX3P48380 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RFX3P48380 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RFX3P48380 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.09■□□□□ 0.65
RFX3P48380 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RFX3P48380 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.09■□□□□ 0.65
RFX3P48380 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
RFX3P48380 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RFX3P48380 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RFX3P48380 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.09■□□□□ 0.65
RFX3P48380 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
RFX3P48380 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RFX3P48380 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RFX3P48380 MFSD11-216ENST00000590393 1141 ntBASIC19.09■□□□□ 0.65
RFX3P48380 BID-214ENST00000617586 542 ntTSL 5 BASIC19.09■□□□□ 0.65
RFX3P48380 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RFX3P48380 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RFX3P48380 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RFX3P48380 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RFX3P48380 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
RFX3P48380 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.09■□□□□ 0.65
RFX3P48380 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
RFX3P48380 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
RFX3P48380 FP700111.2-201ENST00000619190 1892 ntBASIC19.09■□□□□ 0.65
RFX3P48380 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.09■□□□□ 0.65
RFX3P48380 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
RFX3P48380 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RFX3P48380 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.09■□□□□ 0.65
RFX3P48380 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RFX3P48380 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RFX3P48380 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
RFX3P48380 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
RFX3P48380 AC011484.1-201ENST00000377652 1995 ntBASIC19.08■□□□□ 0.65
RFX3P48380 AC092667.1-201ENST00000434301 2586 ntBASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms