Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SOX3P41225 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.16■□□□□ 0.66
SOX3P41225 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.16■□□□□ 0.66
SOX3P41225 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.16■□□□□ 0.66
SOX3P41225 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX3P41225 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.16■□□□□ 0.66
SOX3P41225 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX3P41225 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.15■□□□□ 0.66
SOX3P41225 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.15■□□□□ 0.66
SOX3P41225 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SOX3P41225 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX3P41225 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX3P41225 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX3P41225 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX3P41225 AC091799.1-201ENST00000422823 811 ntBASIC19.15■□□□□ 0.66
SOX3P41225 GUSBP6-202ENST00000438529 1198 ntBASIC19.15■□□□□ 0.66
SOX3P41225 TSPY6P-201ENST00000448518 926 ntBASIC19.15■□□□□ 0.66
SOX3P41225 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.15■□□□□ 0.66
SOX3P41225 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.15■□□□□ 0.66
SOX3P41225 AC069236.1-201ENST00000604339 616 ntBASIC19.15■□□□□ 0.66
SOX3P41225 AC008694.1-202ENST00000636953 945 ntBASIC19.15■□□□□ 0.66
SOX3P41225 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX3P41225 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SOX3P41225 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX3P41225 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX3P41225 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.15■□□□□ 0.66
SOX3P41225 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.15■□□□□ 0.66
SOX3P41225 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX3P41225 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.15■□□□□ 0.66
SOX3P41225 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SOX3P41225 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SOX3P41225 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
SOX3P41225 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SOX3P41225 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
SOX3P41225 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SOX3P41225 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.14■□□□□ 0.65
SOX3P41225 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SOX3P41225 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
SOX3P41225 AC016405.3-201ENST00000607710 860 ntBASIC19.14■□□□□ 0.65
SOX3P41225 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
SOX3P41225 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SOX3P41225 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SOX3P41225 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SOX3P41225 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
SOX3P41225 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SOX3P41225 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SOX3P41225 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SOX3P41225 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SOX3P41225 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SOX3P41225 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.13■□□□□ 0.65
SOX3P41225 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.13■□□□□ 0.65
SOX3P41225 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
SOX3P41225 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SOX3P41225 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.13■□□□□ 0.65
SOX3P41225 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SOX3P41225 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SOX3P41225 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SOX3P41225 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SOX3P41225 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
SOX3P41225 SLC29A4P1-201ENST00000398760 971 ntBASIC19.13■□□□□ 0.65
SOX3P41225 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SOX3P41225 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.13■□□□□ 0.65
SOX3P41225 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SOX3P41225 AL162412.1-201ENST00000567129 965 ntBASIC19.13■□□□□ 0.65
SOX3P41225 OR10C1-204ENST00000622521 1039 ntBASIC19.13■□□□□ 0.65
SOX3P41225 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.13■□□□□ 0.65
SOX3P41225 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.13■□□□□ 0.65
SOX3P41225 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SOX3P41225 FEM1AP1-201ENST00000431297 1995 ntBASIC19.13■□□□□ 0.65
SOX3P41225 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SOX3P41225 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.13■□□□□ 0.65
SOX3P41225 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SOX3P41225 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SOX3P41225 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SOX3P41225 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SOX3P41225 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SOX3P41225 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX3P41225 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX3P41225 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX3P41225 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX3P41225 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX3P41225 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX3P41225 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX3P41225 AC093787.1-201ENST00000450396 207 ntBASIC19.12■□□□□ 0.65
SOX3P41225 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SOX3P41225 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SOX3P41225 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
SOX3P41225 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SOX3P41225 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
SOX3P41225 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SOX3P41225 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SOX3P41225 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SOX3P41225 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SOX3P41225 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SOX3P41225 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SOX3P41225 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SOX3P41225 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SOX3P41225 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SOX3P41225 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SOX3P41225 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms