Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.41■□□□□ 0.7
CPSF4O95639 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CPSF4O95639 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
CPSF4O95639 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CPSF4O95639 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CPSF4O95639 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CPSF4O95639 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CPSF4O95639 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.4■□□□□ 0.7
CPSF4O95639 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CPSF4O95639 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CPSF4O95639 DUX4L2-201ENST00000561772 1275 ntBASIC19.4■□□□□ 0.7
CPSF4O95639 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.4■□□□□ 0.7
CPSF4O95639 DUX4L6-201ENST00000626483 1275 ntBASIC19.4■□□□□ 0.7
CPSF4O95639 DUX4L1-201ENST00000627662 1275 ntBASIC19.4■□□□□ 0.7
CPSF4O95639 DUX4L8-201ENST00000629013 1275 ntBASIC19.4■□□□□ 0.7
CPSF4O95639 DUX4L3-201ENST00000630187 1275 ntBASIC19.4■□□□□ 0.7
CPSF4O95639 DUX4L7-201ENST00000630678 1275 ntBASIC19.4■□□□□ 0.7
CPSF4O95639 DUX4L5-201ENST00000630834 1275 ntBASIC19.4■□□□□ 0.7
CPSF4O95639 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CPSF4O95639 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CPSF4O95639 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.4■□□□□ 0.7
CPSF4O95639 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CPSF4O95639 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CPSF4O95639 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.4■□□□□ 0.7
CPSF4O95639 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
CPSF4O95639 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CPSF4O95639 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CPSF4O95639 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CPSF4O95639 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CPSF4O95639 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CPSF4O95639 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.39■□□□□ 0.69
CPSF4O95639 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CPSF4O95639 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.39■□□□□ 0.69
CPSF4O95639 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CPSF4O95639 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.39■□□□□ 0.69
CPSF4O95639 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.39■□□□□ 0.69
CPSF4O95639 AP001160.3-201ENST00000601484 763 ntBASIC19.39■□□□□ 0.69
CPSF4O95639 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CPSF4O95639 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CPSF4O95639 AC092720.2-201ENST00000602388 1665 ntBASIC19.39■□□□□ 0.69
CPSF4O95639 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.39■□□□□ 0.69
CPSF4O95639 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.39■□□□□ 0.69
CPSF4O95639 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CPSF4O95639 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CPSF4O95639 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
CPSF4O95639 AC138932.1-201ENST00000534164 6830 ntBASIC19.38■□□□□ 0.69
CPSF4O95639 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
CPSF4O95639 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4O95639 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4O95639 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.38■□□□□ 0.69
CPSF4O95639 MIR638-201ENST00000385237 100 ntBASIC19.38■□□□□ 0.69
CPSF4O95639 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4O95639 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4O95639 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.38■□□□□ 0.69
CPSF4O95639 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CPSF4O95639 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4O95639 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4O95639 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.38■□□□□ 0.69
CPSF4O95639 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4O95639 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.38■□□□□ 0.69
CPSF4O95639 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.38■□□□□ 0.69
CPSF4O95639 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.38■□□□□ 0.69
CPSF4O95639 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.38■□□□□ 0.69
CPSF4O95639 AFG3L1P-217ENST00000557444 2447 ntBASIC19.38■□□□□ 0.69
CPSF4O95639 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4O95639 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CPSF4O95639 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.37■□□□□ 0.69
CPSF4O95639 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.37■□□□□ 0.69
CPSF4O95639 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CPSF4O95639 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CPSF4O95639 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CPSF4O95639 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CPSF4O95639 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.37■□□□□ 0.69
CPSF4O95639 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.37■□□□□ 0.69
CPSF4O95639 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.37■□□□□ 0.69
CPSF4O95639 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.37■□□□□ 0.69
CPSF4O95639 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CPSF4O95639 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.37■□□□□ 0.69
CPSF4O95639 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.37■□□□□ 0.69
CPSF4O95639 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.37■□□□□ 0.69
CPSF4O95639 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.37■□□□□ 0.69
CPSF4O95639 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.37■□□□□ 0.69
CPSF4O95639 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CPSF4O95639 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CPSF4O95639 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.37■□□□□ 0.69
CPSF4O95639 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CPSF4O95639 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.37■□□□□ 0.69
CPSF4O95639 AL162377.1-201ENST00000618844 1793 ntBASIC19.37■□□□□ 0.69
CPSF4O95639 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CPSF4O95639 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.36■□□□□ 0.69
CPSF4O95639 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CPSF4O95639 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.36■□□□□ 0.69
CPSF4O95639 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CPSF4O95639 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
CPSF4O95639 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CPSF4O95639 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.36■□□□□ 0.69
CPSF4O95639 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CPSF4O95639 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.36■□□□□ 0.69
CPSF4O95639 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CPSF4O95639 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms