Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PTCD1O75127 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
PTCD1O75127 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PTCD1O75127 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC26.35■■□□□ 1.81
PTCD1O75127 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PTCD1O75127 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC26.35■■□□□ 1.81
PTCD1O75127 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PTCD1O75127 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PTCD1O75127 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC26.35■■□□□ 1.81
PTCD1O75127 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PTCD1O75127 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC26.34■■□□□ 1.81
PTCD1O75127 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PTCD1O75127 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
PTCD1O75127 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC26.34■■□□□ 1.81
PTCD1O75127 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
PTCD1O75127 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PTCD1O75127 BX088651.1-201ENST00000540551 451 ntBASIC26.34■■□□□ 1.81
PTCD1O75127 AL049637.2-201ENST00000641778 930 ntBASIC26.34■■□□□ 1.81
PTCD1O75127 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
PTCD1O75127 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PTCD1O75127 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PTCD1O75127 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PTCD1O75127 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
PTCD1O75127 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC26.33■■□□□ 1.81
PTCD1O75127 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PTCD1O75127 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PTCD1O75127 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
PTCD1O75127 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC26.33■■□□□ 1.81
PTCD1O75127 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC26.33■■□□□ 1.81
PTCD1O75127 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
PTCD1O75127 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC26.33■■□□□ 1.81
PTCD1O75127 TSPY15P-201ENST00000457163 923 ntBASIC26.33■■□□□ 1.81
PTCD1O75127 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC26.33■■□□□ 1.81
PTCD1O75127 RPS20-210ENST00000523936 899 ntTSL 2 BASIC26.33■■□□□ 1.81
PTCD1O75127 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
PTCD1O75127 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC26.33■■□□□ 1.81
PTCD1O75127 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
PTCD1O75127 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PTCD1O75127 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC26.33■■□□□ 1.81
PTCD1O75127 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
PTCD1O75127 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC26.33■■□□□ 1.8
PTCD1O75127 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC26.32■■□□□ 1.8
PTCD1O75127 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC26.32■■□□□ 1.8
PTCD1O75127 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PTCD1O75127 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PTCD1O75127 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PTCD1O75127 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC26.32■■□□□ 1.8
PTCD1O75127 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC26.32■■□□□ 1.8
PTCD1O75127 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PTCD1O75127 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC26.32■■□□□ 1.8
PTCD1O75127 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PTCD1O75127 AC110285.5-201ENST00000611501 352 ntBASIC26.32■■□□□ 1.8
PTCD1O75127 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PTCD1O75127 DYM-203ENST00000442713 2147 ntTSL 2 BASIC26.32■■□□□ 1.8
PTCD1O75127 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC26.31■■□□□ 1.8
PTCD1O75127 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC26.31■■□□□ 1.8
PTCD1O75127 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PTCD1O75127 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC26.31■■□□□ 1.8
PTCD1O75127 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
PTCD1O75127 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
PTCD1O75127 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC26.31■■□□□ 1.8
PTCD1O75127 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC26.31■■□□□ 1.8
PTCD1O75127 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC26.31■■□□□ 1.8
PTCD1O75127 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC26.31■■□□□ 1.8
PTCD1O75127 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
PTCD1O75127 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
PTCD1O75127 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC26.31■■□□□ 1.8
PTCD1O75127 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PTCD1O75127 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
PTCD1O75127 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
PTCD1O75127 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PTCD1O75127 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PTCD1O75127 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC26.3■■□□□ 1.8
PTCD1O75127 LSR-203ENST00000360798 1963 ntTSL 2 BASIC26.3■■□□□ 1.8
PTCD1O75127 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
PTCD1O75127 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
PTCD1O75127 AL390719.1-204ENST00000412397 1219 ntBASIC26.3■■□□□ 1.8
PTCD1O75127 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
PTCD1O75127 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC26.3■■□□□ 1.8
PTCD1O75127 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC26.3■■□□□ 1.8
PTCD1O75127 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC26.3■■□□□ 1.8
PTCD1O75127 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC26.3■■□□□ 1.8
PTCD1O75127 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC26.3■■□□□ 1.8
PTCD1O75127 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
PTCD1O75127 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC26.3■■□□□ 1.8
PTCD1O75127 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
PTCD1O75127 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
PTCD1O75127 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
PTCD1O75127 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PTCD1O75127 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PTCD1O75127 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PTCD1O75127 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PTCD1O75127 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
PTCD1O75127 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PTCD1O75127 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PTCD1O75127 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC26.29■■□□□ 1.8
PTCD1O75127 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PTCD1O75127 RER1-204ENST00000378518 522 ntTSL 3 BASIC26.29■■□□□ 1.8
PTCD1O75127 FAM210CP-201ENST00000445714 574 ntBASIC26.29■■□□□ 1.8
PTCD1O75127 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms