Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM13O60858 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM13O60858 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.08■□□□□ 0.8
TRIM13O60858 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
TRIM13O60858 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.08■□□□□ 0.8
TRIM13O60858 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM13O60858 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM13O60858 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.07■□□□□ 0.8
TRIM13O60858 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.07■□□□□ 0.8
TRIM13O60858 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM13O60858 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.07■□□□□ 0.8
TRIM13O60858 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM13O60858 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
TRIM13O60858 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM13O60858 KRT87P-202ENST00000534226 1464 ntBASIC20.07■□□□□ 0.8
TRIM13O60858 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM13O60858 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM13O60858 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.07■□□□□ 0.8
TRIM13O60858 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM13O60858 AL136967.2-201ENST00000623968 743 ntBASIC20.07■□□□□ 0.8
TRIM13O60858 MIR2861-201ENST00000636310 90 ntBASIC20.07■□□□□ 0.8
TRIM13O60858 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM13O60858 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM13O60858 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.07■□□□□ 0.8
TRIM13O60858 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM13O60858 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM13O60858 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
TRIM13O60858 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
TRIM13O60858 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM13O60858 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
TRIM13O60858 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.06■□□□□ 0.8
TRIM13O60858 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.06■□□□□ 0.8
TRIM13O60858 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 AC079140.4-201ENST00000507448 529 ntBASIC20.06■□□□□ 0.8
TRIM13O60858 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.06■□□□□ 0.8
TRIM13O60858 AC138907.5-202ENST00000569484 235 ntBASIC20.06■□□□□ 0.8
TRIM13O60858 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.06■□□□□ 0.8
TRIM13O60858 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
TRIM13O60858 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM13O60858 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM13O60858 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM13O60858 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM13O60858 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM13O60858 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM13O60858 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM13O60858 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM13O60858 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM13O60858 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.05■□□□□ 0.8
TRIM13O60858 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.05■□□□□ 0.8
TRIM13O60858 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM13O60858 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.05■□□□□ 0.8
TRIM13O60858 AC120498.10-201ENST00000621827 505 ntBASIC20.05■□□□□ 0.8
TRIM13O60858 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM13O60858 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM13O60858 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM13O60858 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
TRIM13O60858 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM13O60858 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM13O60858 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM13O60858 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TRIM13O60858 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM13O60858 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
TRIM13O60858 AC116050.2-201ENST00000612102 1779 ntBASIC20.04■□□□□ 0.8
TRIM13O60858 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM13O60858 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM13O60858 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
TRIM13O60858 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM13O60858 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM13O60858 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM13O60858 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM13O60858 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM13O60858 AL358852.1-201ENST00000623174 1268 ntBASIC20.04■□□□□ 0.8
TRIM13O60858 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM13O60858 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM13O60858 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM13O60858 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.04■□□□□ 0.8
TRIM13O60858 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM13O60858 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM13O60858 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM13O60858 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM13O60858 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.03■□□□□ 0.8
TRIM13O60858 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM13O60858 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
TRIM13O60858 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms