Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC25.89■■□□□ 1.73
CACNA1FO60840 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC25.89■■□□□ 1.73
CACNA1FO60840 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC25.89■■□□□ 1.73
CACNA1FO60840 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC25.89■■□□□ 1.73
CACNA1FO60840 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC25.89■■□□□ 1.73
CACNA1FO60840 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
CACNA1FO60840 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
CACNA1FO60840 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
CACNA1FO60840 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
CACNA1FO60840 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC25.88■■□□□ 1.73
CACNA1FO60840 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
CACNA1FO60840 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
CACNA1FO60840 ABHD17AP1-201ENST00000358206 933 ntBASIC25.88■■□□□ 1.73
CACNA1FO60840 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC25.88■■□□□ 1.73
CACNA1FO60840 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC25.88■■□□□ 1.73
CACNA1FO60840 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC25.88■■□□□ 1.73
CACNA1FO60840 BID-203ENST00000399765 1879 ntTSL 2 BASIC25.87■■□□□ 1.73
CACNA1FO60840 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
CACNA1FO60840 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC25.87■■□□□ 1.73
CACNA1FO60840 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC25.87■■□□□ 1.73
CACNA1FO60840 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
CACNA1FO60840 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
CACNA1FO60840 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC25.87■■□□□ 1.73
CACNA1FO60840 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC25.87■■□□□ 1.73
CACNA1FO60840 AP003097.1-201ENST00000530657 1135 ntBASIC25.87■■□□□ 1.73
CACNA1FO60840 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC25.87■■□□□ 1.73
CACNA1FO60840 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
CACNA1FO60840 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC25.87■■□□□ 1.73
CACNA1FO60840 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC25.86■■□□□ 1.73
CACNA1FO60840 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CACNA1FO60840 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC25.86■■□□□ 1.73
CACNA1FO60840 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC25.86■■□□□ 1.73
CACNA1FO60840 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
CACNA1FO60840 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC25.86■■□□□ 1.73
CACNA1FO60840 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
CACNA1FO60840 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
CACNA1FO60840 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC25.86■■□□□ 1.73
CACNA1FO60840 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CACNA1FO60840 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
CACNA1FO60840 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CACNA1FO60840 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
CACNA1FO60840 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC25.86■■□□□ 1.73
CACNA1FO60840 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
CACNA1FO60840 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CACNA1FO60840 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC25.85■■□□□ 1.73
CACNA1FO60840 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CACNA1FO60840 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CACNA1FO60840 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CACNA1FO60840 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CACNA1FO60840 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CACNA1FO60840 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC25.85■■□□□ 1.73
CACNA1FO60840 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CACNA1FO60840 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC25.84■■□□□ 1.73
CACNA1FO60840 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC25.84■■□□□ 1.73
CACNA1FO60840 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
CACNA1FO60840 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
CACNA1FO60840 NXN-202ENST00000537628 1340 ntTSL 3 BASIC25.84■■□□□ 1.73
CACNA1FO60840 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
CACNA1FO60840 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC25.84■■□□□ 1.73
CACNA1FO60840 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC25.84■■□□□ 1.73
CACNA1FO60840 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC25.84■■□□□ 1.73
CACNA1FO60840 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC25.84■■□□□ 1.73
CACNA1FO60840 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC25.84■■□□□ 1.73
CACNA1FO60840 ME2-216ENST00000639850 2331 ntTSL 5 BASIC25.84■■□□□ 1.73
CACNA1FO60840 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC25.84■■□□□ 1.73
CACNA1FO60840 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC25.84■■□□□ 1.73
CACNA1FO60840 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CACNA1FO60840 BET1L-207ENST00000529614 560 ntTSL 5 BASIC25.84■■□□□ 1.73
CACNA1FO60840 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC25.84■■□□□ 1.73
CACNA1FO60840 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
CACNA1FO60840 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
CACNA1FO60840 FP700111.2-201ENST00000619190 1892 ntBASIC25.83■■□□□ 1.73
CACNA1FO60840 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
CACNA1FO60840 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC25.83■■□□□ 1.73
CACNA1FO60840 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
CACNA1FO60840 AC092368.3-202ENST00000574180 1591 ntBASIC25.83■■□□□ 1.73
CACNA1FO60840 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC25.83■■□□□ 1.73
CACNA1FO60840 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC25.83■■□□□ 1.73
CACNA1FO60840 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC25.83■■□□□ 1.73
CACNA1FO60840 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC25.83■■□□□ 1.73
CACNA1FO60840 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
CACNA1FO60840 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
CACNA1FO60840 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
CACNA1FO60840 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
CACNA1FO60840 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC25.82■■□□□ 1.72
CACNA1FO60840 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC25.82■■□□□ 1.72
CACNA1FO60840 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC25.82■■□□□ 1.72
CACNA1FO60840 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC25.82■■□□□ 1.72
CACNA1FO60840 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
CACNA1FO60840 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC25.82■■□□□ 1.72
CACNA1FO60840 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC25.82■■□□□ 1.72
CACNA1FO60840 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
CACNA1FO60840 H19-201ENST00000411754 1788 ntTSL 5 BASIC25.82■■□□□ 1.72
CACNA1FO60840 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC25.82■■□□□ 1.72
CACNA1FO60840 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC25.82■■□□□ 1.72
CACNA1FO60840 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
CACNA1FO60840 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC25.82■■□□□ 1.72
CACNA1FO60840 CD99P1-205ENST00000527459 561 ntBASIC25.82■■□□□ 1.72
CACNA1FO60840 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC25.82■■□□□ 1.72
CACNA1FO60840 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC25.82■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms