Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL512408.1-201ENST00000569378 2000 ntBASIC17.93■□□□□ 0.46
LMX1BO60663 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LMX1BO60663 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC17.92■□□□□ 0.46
LMX1BO60663 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC17.92■□□□□ 0.46
LMX1BO60663 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1BO60663 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
LMX1BO60663 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.92■□□□□ 0.46
LMX1BO60663 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1BO60663 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
LMX1BO60663 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LMX1BO60663 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1BO60663 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1BO60663 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1BO60663 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.92■□□□□ 0.46
LMX1BO60663 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1BO60663 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
LMX1BO60663 CD99P1-205ENST00000527459 561 ntBASIC17.92■□□□□ 0.46
LMX1BO60663 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC17.92■□□□□ 0.46
LMX1BO60663 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC17.92■□□□□ 0.46
LMX1BO60663 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LMX1BO60663 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1BO60663 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LMX1BO60663 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1BO60663 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC17.92■□□□□ 0.46
LMX1BO60663 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC17.92■□□□□ 0.46
LMX1BO60663 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1BO60663 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1BO60663 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC17.92■□□□□ 0.46
LMX1BO60663 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC17.92■□□□□ 0.46
LMX1BO60663 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LMX1BO60663 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1BO60663 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC17.91■□□□□ 0.46
LMX1BO60663 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1BO60663 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1BO60663 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1BO60663 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.91■□□□□ 0.46
LMX1BO60663 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1BO60663 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LMX1BO60663 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC17.91■□□□□ 0.46
LMX1BO60663 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1BO60663 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LMX1BO60663 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.91■□□□□ 0.46
LMX1BO60663 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC17.91■□□□□ 0.46
LMX1BO60663 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LMX1BO60663 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
LMX1BO60663 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1BO60663 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.9■□□□□ 0.46
LMX1BO60663 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1BO60663 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
LMX1BO60663 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
LMX1BO60663 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1BO60663 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.9■□□□□ 0.46
LMX1BO60663 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
LMX1BO60663 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC17.9■□□□□ 0.46
LMX1BO60663 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC17.9■□□□□ 0.46
LMX1BO60663 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.9■□□□□ 0.46
LMX1BO60663 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1BO60663 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LMX1BO60663 AC011484.1-201ENST00000377652 1995 ntBASIC17.9■□□□□ 0.46
LMX1BO60663 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
LMX1BO60663 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
LMX1BO60663 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC17.89■□□□□ 0.45
LMX1BO60663 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC17.89■□□□□ 0.45
LMX1BO60663 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.89■□□□□ 0.45
LMX1BO60663 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1BO60663 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1BO60663 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1BO60663 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
LMX1BO60663 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.89■□□□□ 0.45
LMX1BO60663 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
LMX1BO60663 AL121832.2-201ENST00000610979 668 ntBASIC17.89■□□□□ 0.45
LMX1BO60663 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1BO60663 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
LMX1BO60663 AL121603.2-201ENST00000557373 2117 ntBASIC17.89■□□□□ 0.45
LMX1BO60663 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LMX1BO60663 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1BO60663 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1BO60663 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.88■□□□□ 0.45
LMX1BO60663 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1BO60663 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1BO60663 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1BO60663 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.88■□□□□ 0.45
LMX1BO60663 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1BO60663 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1BO60663 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1BO60663 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC17.88■□□□□ 0.45
LMX1BO60663 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.88■□□□□ 0.45
LMX1BO60663 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.88■□□□□ 0.45
LMX1BO60663 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1BO60663 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
LMX1BO60663 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1BO60663 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1BO60663 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1BO60663 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1BO60663 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LMX1BO60663 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms