Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC23■■□□□ 1.27
MSH4O15457 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC23■■□□□ 1.27
MSH4O15457 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC23■■□□□ 1.27
MSH4O15457 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
MSH4O15457 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH4O15457 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH4O15457 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH4O15457 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH4O15457 FP700111.2-201ENST00000619190 1892 ntBASIC22.99■■□□□ 1.27
MSH4O15457 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH4O15457 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH4O15457 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH4O15457 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
MSH4O15457 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH4O15457 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH4O15457 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH4O15457 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH4O15457 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC22.99■■□□□ 1.27
MSH4O15457 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH4O15457 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC22.99■■□□□ 1.27
MSH4O15457 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH4O15457 NXN-202ENST00000537628 1340 ntTSL 3 BASIC22.99■■□□□ 1.27
MSH4O15457 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH4O15457 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH4O15457 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
MSH4O15457 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH4O15457 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH4O15457 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH4O15457 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
MSH4O15457 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC22.98■■□□□ 1.27
MSH4O15457 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH4O15457 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC22.98■■□□□ 1.27
MSH4O15457 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC22.98■■□□□ 1.27
MSH4O15457 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC22.98■■□□□ 1.27
MSH4O15457 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
MSH4O15457 AC007225.1-201ENST00000566331 1836 ntBASIC22.98■■□□□ 1.27
MSH4O15457 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH4O15457 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC22.98■■□□□ 1.27
MSH4O15457 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH4O15457 STK25-205ENST00000405883 1904 ntTSL 2 BASIC22.98■■□□□ 1.27
MSH4O15457 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
MSH4O15457 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
MSH4O15457 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
MSH4O15457 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC22.97■■□□□ 1.27
MSH4O15457 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC22.97■■□□□ 1.27
MSH4O15457 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
MSH4O15457 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
MSH4O15457 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
MSH4O15457 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
MSH4O15457 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC22.97■■□□□ 1.27
MSH4O15457 C2orf69P4-201ENST00000565394 541 ntBASIC22.97■■□□□ 1.27
MSH4O15457 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC22.97■■□□□ 1.27
MSH4O15457 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC22.97■■□□□ 1.27
MSH4O15457 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
MSH4O15457 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC22.97■■□□□ 1.27
MSH4O15457 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
MSH4O15457 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC22.97■■□□□ 1.27
MSH4O15457 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
MSH4O15457 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
MSH4O15457 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
MSH4O15457 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
MSH4O15457 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
MSH4O15457 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
MSH4O15457 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC22.96■■□□□ 1.27
MSH4O15457 GATS-209ENST00000454084 1030 ntTSL 3 BASIC22.96■■□□□ 1.27
MSH4O15457 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC22.96■■□□□ 1.27
MSH4O15457 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC22.96■■□□□ 1.27
MSH4O15457 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
MSH4O15457 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC22.96■■□□□ 1.27
MSH4O15457 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.27
MSH4O15457 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.27
MSH4O15457 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
MSH4O15457 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
MSH4O15457 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
MSH4O15457 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
MSH4O15457 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
MSH4O15457 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
MSH4O15457 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
MSH4O15457 BID-203ENST00000399765 1879 ntTSL 2 BASIC22.95■■□□□ 1.26
MSH4O15457 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
MSH4O15457 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC22.95■■□□□ 1.26
MSH4O15457 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.26
MSH4O15457 HES2-205ENST00000487437 968 ntTSL 3 BASIC22.95■■□□□ 1.26
MSH4O15457 CD99P1-205ENST00000527459 561 ntBASIC22.95■■□□□ 1.26
MSH4O15457 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
MSH4O15457 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
MSH4O15457 EFS-203ENST00000429593 2610 ntTSL 2 BASIC22.95■■□□□ 1.26
MSH4O15457 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
MSH4O15457 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC22.94■■□□□ 1.26
MSH4O15457 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
MSH4O15457 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
MSH4O15457 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
MSH4O15457 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
MSH4O15457 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
MSH4O15457 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC22.94■■□□□ 1.26
MSH4O15457 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
MSH4O15457 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC22.94■■□□□ 1.26
MSH4O15457 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
MSH4O15457 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
MSH4O15457 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms