Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC35.35■■■■□ 3.25
CUX2O14529 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC35.35■■■■□ 3.25
CUX2O14529 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC35.35■■■■□ 3.25
CUX2O14529 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC35.35■■■■□ 3.25
CUX2O14529 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC35.35■■■■□ 3.25
CUX2O14529 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC35.35■■■■□ 3.25
CUX2O14529 AC137767.1-201ENST00000602918 1920 ntBASIC35.35■■■■□ 3.25
CUX2O14529 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC35.35■■■■□ 3.25
CUX2O14529 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC35.35■■■■□ 3.25
CUX2O14529 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
CUX2O14529 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC35.34■■■■□ 3.25
CUX2O14529 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC35.34■■■■□ 3.25
CUX2O14529 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC35.34■■■■□ 3.25
CUX2O14529 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC35.34■■■■□ 3.25
CUX2O14529 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC35.34■■■■□ 3.25
CUX2O14529 RER1-204ENST00000378518 522 ntTSL 3 BASIC35.34■■■■□ 3.25
CUX2O14529 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
CUX2O14529 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC35.34■■■■□ 3.25
CUX2O14529 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC35.34■■■■□ 3.25
CUX2O14529 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC35.33■■■■□ 3.25
CUX2O14529 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
CUX2O14529 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
CUX2O14529 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC35.33■■■■□ 3.25
CUX2O14529 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
CUX2O14529 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC35.33■■■■□ 3.25
CUX2O14529 AL121906.2-201ENST00000621597 723 ntBASIC35.33■■■■□ 3.25
CUX2O14529 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
CUX2O14529 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.25
CUX2O14529 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC35.32■■■■□ 3.24
CUX2O14529 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC35.32■■■■□ 3.24
CUX2O14529 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC35.32■■■■□ 3.24
CUX2O14529 AC117947.1-201ENST00000427448 529 ntBASIC35.32■■■■□ 3.24
CUX2O14529 FDX1P1-201ENST00000449115 551 ntBASIC35.32■■■■□ 3.24
CUX2O14529 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC35.32■■■■□ 3.24
CUX2O14529 AC093458.2-201ENST00000623150 629 ntBASIC35.32■■■■□ 3.24
CUX2O14529 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
CUX2O14529 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC35.31■■■■□ 3.24
CUX2O14529 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
CUX2O14529 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
CUX2O14529 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC35.31■■■■□ 3.24
CUX2O14529 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC35.31■■■■□ 3.24
CUX2O14529 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC35.31■■■■□ 3.24
CUX2O14529 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC35.31■■■■□ 3.24
CUX2O14529 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC35.31■■■■□ 3.24
CUX2O14529 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC35.31■■■■□ 3.24
CUX2O14529 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC35.31■■■■□ 3.24
CUX2O14529 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
CUX2O14529 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
CUX2O14529 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC35.3■■■■□ 3.24
CUX2O14529 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC35.3■■■■□ 3.24
CUX2O14529 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC35.3■■■■□ 3.24
CUX2O14529 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
CUX2O14529 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC35.29■■■■□ 3.24
CUX2O14529 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC35.29■■■■□ 3.24
CUX2O14529 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC35.29■■■■□ 3.24
CUX2O14529 PCED1CP-201ENST00000419887 785 ntBASIC35.29■■■■□ 3.24
CUX2O14529 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC35.29■■■■□ 3.24
CUX2O14529 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC35.29■■■■□ 3.24
CUX2O14529 NDUFV2-AS1-203ENST00000608008 779 ntBASIC35.29■■■■□ 3.24
CUX2O14529 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC35.29■■■■□ 3.24
CUX2O14529 AL121956.5-201ENST00000625261 221 ntBASIC35.29■■■■□ 3.24
CUX2O14529 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
CUX2O14529 AC087742.1-201ENST00000575880 1738 ntBASIC35.29■■■■□ 3.24
CUX2O14529 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC35.29■■■■□ 3.24
CUX2O14529 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
CUX2O14529 AC007322.3-201ENST00000426526 701 ntBASIC35.29■■■■□ 3.24
CUX2O14529 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC35.29■■■■□ 3.24
CUX2O14529 AC091390.4-202ENST00000476426 537 ntBASIC35.29■■■■□ 3.24
CUX2O14529 AC128688.1-201ENST00000487626 519 ntBASIC35.29■■■■□ 3.24
CUX2O14529 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC35.29■■■■□ 3.24
CUX2O14529 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC35.29■■■■□ 3.24
CUX2O14529 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC35.29■■■■□ 3.24
CUX2O14529 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC35.29■■■■□ 3.24
CUX2O14529 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC35.29■■■■□ 3.24
CUX2O14529 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC35.29■■■■□ 3.24
CUX2O14529 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC35.28■■■■□ 3.24
CUX2O14529 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
CUX2O14529 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
CUX2O14529 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC35.28■■■■□ 3.24
CUX2O14529 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC35.28■■■■□ 3.24
CUX2O14529 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC35.28■■■■□ 3.24
CUX2O14529 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
CUX2O14529 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC35.28■■■■□ 3.24
CUX2O14529 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
CUX2O14529 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC35.27■■■■□ 3.24
CUX2O14529 FAM86EP-206ENST00000510506 987 ntBASIC35.27■■■■□ 3.24
CUX2O14529 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC35.27■■■■□ 3.24
CUX2O14529 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC35.27■■■■□ 3.24
CUX2O14529 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC35.27■■■■□ 3.24
CUX2O14529 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC35.26■■■■□ 3.24
CUX2O14529 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC35.26■■■■□ 3.24
CUX2O14529 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC35.26■■■■□ 3.24
CUX2O14529 IER3-202ENST00000376377 1350 ntBASIC35.26■■■■□ 3.24
CUX2O14529 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC35.26■■■■□ 3.23
CUX2O14529 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC35.26■■■■□ 3.23
CUX2O14529 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC35.26■■■■□ 3.23
CUX2O14529 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC35.26■■■■□ 3.23
CUX2O14529 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC35.26■■■■□ 3.23
CUX2O14529 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC35.25■■■■□ 3.23
CUX2O14529 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC35.25■■■■□ 3.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms