Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
TRIM38O00635 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.5■□□□□ 0.87
TRIM38O00635 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM38O00635 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
TRIM38O00635 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM38O00635 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM38O00635 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM38O00635 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM38O00635 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM38O00635 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM38O00635 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM38O00635 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM38O00635 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.49■□□□□ 0.87
TRIM38O00635 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.49■□□□□ 0.87
TRIM38O00635 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM38O00635 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM38O00635 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM38O00635 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM38O00635 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM38O00635 AC091874.3-201ENST00000512672 1195 ntBASIC20.49■□□□□ 0.87
TRIM38O00635 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
TRIM38O00635 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM38O00635 AC243732.1-201ENST00000612648 864 ntBASIC20.49■□□□□ 0.87
TRIM38O00635 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.49■□□□□ 0.87
TRIM38O00635 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM38O00635 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM38O00635 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM38O00635 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.48■□□□□ 0.87
TRIM38O00635 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM38O00635 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM38O00635 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM38O00635 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM38O00635 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM38O00635 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM38O00635 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM38O00635 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.48■□□□□ 0.87
TRIM38O00635 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.48■□□□□ 0.87
TRIM38O00635 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.48■□□□□ 0.87
TRIM38O00635 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM38O00635 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.48■□□□□ 0.87
TRIM38O00635 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM38O00635 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.48■□□□□ 0.87
TRIM38O00635 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM38O00635 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM38O00635 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM38O00635 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM38O00635 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.47■□□□□ 0.87
TRIM38O00635 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM38O00635 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM38O00635 AC003102.1-202ENST00000563394 1796 ntBASIC20.47■□□□□ 0.87
TRIM38O00635 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM38O00635 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM38O00635 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM38O00635 ESRRAP1-201ENST00000400596 1257 ntBASIC20.47■□□□□ 0.87
TRIM38O00635 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM38O00635 DUSP5P2-201ENST00000426873 1033 ntBASIC20.47■□□□□ 0.87
TRIM38O00635 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM38O00635 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.47■□□□□ 0.87
TRIM38O00635 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.47■□□□□ 0.87
TRIM38O00635 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM38O00635 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
TRIM38O00635 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM38O00635 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
TRIM38O00635 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM38O00635 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM38O00635 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM38O00635 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
TRIM38O00635 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.46■□□□□ 0.87
TRIM38O00635 LINC01006-201ENST00000333319 2292 ntBASIC20.46■□□□□ 0.87
TRIM38O00635 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM38O00635 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM38O00635 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
TRIM38O00635 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
TRIM38O00635 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.46■□□□□ 0.87
TRIM38O00635 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.46■□□□□ 0.87
TRIM38O00635 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.46■□□□□ 0.87
TRIM38O00635 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM38O00635 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM38O00635 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM38O00635 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM38O00635 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
TRIM38O00635 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM38O00635 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM38O00635 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM38O00635 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.45■□□□□ 0.86
TRIM38O00635 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM38O00635 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM38O00635 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
TRIM38O00635 RPS2P52-201ENST00000469610 820 ntBASIC20.45■□□□□ 0.86
TRIM38O00635 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.45■□□□□ 0.86
TRIM38O00635 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.45■□□□□ 0.86
TRIM38O00635 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.45■□□□□ 0.86
TRIM38O00635 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM38O00635 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM38O00635 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
TRIM38O00635 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
TRIM38O00635 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM38O00635 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM38O00635 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
TRIM38O00635 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms