Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 ABHD17AP3-201ENST00000503096 1137 ntBASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC15.96■□□□□ 0.15
TRAV1-1A0A0B4J248 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
TRAV1-1A0A0B4J248 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
TRAV1-1A0A0B4J248 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
TRAV1-1A0A0B4J248 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
TRAV1-1A0A0B4J248 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
TRAV1-1A0A0B4J248 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC15.96■□□□□ 0.14
TRAV1-1A0A0B4J248 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 TK2-216ENST00000564917 1156 ntTSL 3 BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 AC010980.1-201ENST00000587192 1142 ntBASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC15.95■□□□□ 0.14
TRAV1-1A0A0B4J248 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 AC055733.4-201ENST00000638462 1354 ntBASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRAV1-1A0A0B4J248 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC15.93■□□□□ 0.14
TRAV1-1A0A0B4J248 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV1-1A0A0B4J248 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC15.93■□□□□ 0.14
TRAV1-1A0A0B4J248 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC15.93■□□□□ 0.14
TRAV1-1A0A0B4J248 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV1-1A0A0B4J248 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV1-1A0A0B4J248 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC15.93■□□□□ 0.14
TRAV1-1A0A0B4J248 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
TRAV1-1A0A0B4J248 PTGES2-AS1-201ENST00000443493 2100 ntBASIC15.93■□□□□ 0.14
TRAV1-1A0A0B4J248 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV1-1A0A0B4J248 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV1-1A0A0B4J248 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC15.93■□□□□ 0.14
TRAV1-1A0A0B4J248 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
TRAV1-1A0A0B4J248 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
TRAV1-1A0A0B4J248 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 TFPT-201ENST00000391757 774 ntTSL 5 BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms