Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
CHD8Q9HCK8 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CHD8Q9HCK8 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC25.55■■□□□ 1.68
CHD8Q9HCK8 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.55■■□□□ 1.68
CHD8Q9HCK8 TPT1-202ENST00000379055 948 ntTSL 2 BASIC25.54■■□□□ 1.68
CHD8Q9HCK8 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC25.53■■□□□ 1.68
CHD8Q9HCK8 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC25.53■■□□□ 1.68
CHD8Q9HCK8 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
CHD8Q9HCK8 MIR935-201ENST00000401179 91 ntBASIC25.51■■□□□ 1.67
CHD8Q9HCK8 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC25.51■■□□□ 1.67
CHD8Q9HCK8 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CHD8Q9HCK8 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CHD8Q9HCK8 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC25.5■■□□□ 1.67
CHD8Q9HCK8 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CHD8Q9HCK8 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CHD8Q9HCK8 AL035685.1-201ENST00000636663 812 ntBASIC25.49■■□□□ 1.67
CHD8Q9HCK8 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC25.48■■□□□ 1.67
CHD8Q9HCK8 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
CHD8Q9HCK8 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
CHD8Q9HCK8 TSPY13P-201ENST00000338964 914 ntBASIC25.48■■□□□ 1.67
CHD8Q9HCK8 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CHD8Q9HCK8 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CHD8Q9HCK8 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
CHD8Q9HCK8 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.46■■□□□ 1.67
CHD8Q9HCK8 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC25.46■■□□□ 1.67
CHD8Q9HCK8 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
CHD8Q9HCK8 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC25.45■■□□□ 1.66
CHD8Q9HCK8 GFER-205ENST00000569451 517 ntTSL 5 BASIC25.45■■□□□ 1.66
CHD8Q9HCK8 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
CHD8Q9HCK8 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
CHD8Q9HCK8 CEP120-209ENST00000515110 606 ntTSL 3 BASIC25.43■■□□□ 1.66
CHD8Q9HCK8 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
CHD8Q9HCK8 TRIR-205ENST00000592273 783 ntTSL 3 BASIC25.43■■□□□ 1.66
CHD8Q9HCK8 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CHD8Q9HCK8 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CHD8Q9HCK8 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CHD8Q9HCK8 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
CHD8Q9HCK8 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CHD8Q9HCK8 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
CHD8Q9HCK8 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.41■■□□□ 1.66
CHD8Q9HCK8 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CHD8Q9HCK8 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CHD8Q9HCK8 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC25.4■■□□□ 1.66
CHD8Q9HCK8 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
CHD8Q9HCK8 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
CHD8Q9HCK8 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
CHD8Q9HCK8 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
CHD8Q9HCK8 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CHD8Q9HCK8 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC25.38■■□□□ 1.65
CHD8Q9HCK8 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC25.36■■□□□ 1.65
CHD8Q9HCK8 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC25.36■■□□□ 1.65
CHD8Q9HCK8 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CHD8Q9HCK8 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC25.34■■□□□ 1.65
CHD8Q9HCK8 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
CHD8Q9HCK8 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC25.33■■□□□ 1.65
CHD8Q9HCK8 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
CHD8Q9HCK8 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CHD8Q9HCK8 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
CHD8Q9HCK8 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.32■■□□□ 1.64
CHD8Q9HCK8 HYI-213ENST00000583037 1322 ntTSL 5 BASIC25.32■■□□□ 1.64
CHD8Q9HCK8 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
CHD8Q9HCK8 AL451085.2-201ENST00000605085 799 ntBASIC25.32■■□□□ 1.64
CHD8Q9HCK8 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
CHD8Q9HCK8 KRT18P60-201ENST00000312876 1297 ntBASIC25.3■■□□□ 1.64
CHD8Q9HCK8 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
CHD8Q9HCK8 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CHD8Q9HCK8 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CHD8Q9HCK8 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
CHD8Q9HCK8 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC25.28■■□□□ 1.64
CHD8Q9HCK8 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CHD8Q9HCK8 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CHD8Q9HCK8 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
CHD8Q9HCK8 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CHD8Q9HCK8 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC25.26■■□□□ 1.63
CHD8Q9HCK8 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CHD8Q9HCK8 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
CHD8Q9HCK8 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC25.25■■□□□ 1.63
CHD8Q9HCK8 AC022413.1-201ENST00000624602 984 ntBASIC25.24■■□□□ 1.63
CHD8Q9HCK8 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
CHD8Q9HCK8 AC004987.1-201ENST00000428627 508 ntBASIC25.23■■□□□ 1.63
CHD8Q9HCK8 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.23■■□□□ 1.63
CHD8Q9HCK8 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CHD8Q9HCK8 U85056.1-201ENST00000616429 682 ntBASIC25.21■■□□□ 1.63
CHD8Q9HCK8 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CHD8Q9HCK8 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CHD8Q9HCK8 ATP5G2P3-201ENST00000429083 425 ntBASIC25.2■■□□□ 1.62
CHD8Q9HCK8 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CHD8Q9HCK8 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CHD8Q9HCK8 AC131212.1-201ENST00000613771 668 ntBASIC25.19■■□□□ 1.62
CHD8Q9HCK8 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CHD8Q9HCK8 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CHD8Q9HCK8 CHST11-202ENST00000546689 756 ntTSL 2 BASIC25.18■■□□□ 1.62
CHD8Q9HCK8 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CHD8Q9HCK8 GUK1-208ENST00000366728 842 ntTSL 2 BASIC25.17■■□□□ 1.62
CHD8Q9HCK8 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC25.17■■□□□ 1.62
CHD8Q9HCK8 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC25.16■■□□□ 1.62
CHD8Q9HCK8 HES4-202ENST00000428771 1040 ntTSL 2 BASIC25.16■■□□□ 1.62
CHD8Q9HCK8 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC25.16■■□□□ 1.62
CHD8Q9HCK8 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CHD8Q9HCK8 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms