Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLRN3Q8NCR9 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC21.17■□□□□ 0.98
CLRN3Q8NCR9 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLRN3Q8NCR9 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLRN3Q8NCR9 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLRN3Q8NCR9 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CLRN3Q8NCR9 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLRN3Q8NCR9 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLRN3Q8NCR9 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLRN3Q8NCR9 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLRN3Q8NCR9 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLRN3Q8NCR9 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLRN3Q8NCR9 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLRN3Q8NCR9 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLRN3Q8NCR9 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.12■□□□□ 0.97
CLRN3Q8NCR9 ST7-AS1-201ENST00000456775 1889 ntBASIC21.12■□□□□ 0.97
CLRN3Q8NCR9 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLRN3Q8NCR9 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
CLRN3Q8NCR9 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CLRN3Q8NCR9 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLRN3Q8NCR9 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.11■□□□□ 0.97
CLRN3Q8NCR9 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLRN3Q8NCR9 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CLRN3Q8NCR9 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLRN3Q8NCR9 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
CLRN3Q8NCR9 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLRN3Q8NCR9 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLRN3Q8NCR9 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLRN3Q8NCR9 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CLRN3Q8NCR9 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLRN3Q8NCR9 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CLRN3Q8NCR9 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21.08■□□□□ 0.97
CLRN3Q8NCR9 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLRN3Q8NCR9 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CLRN3Q8NCR9 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CLRN3Q8NCR9 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
CLRN3Q8NCR9 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLRN3Q8NCR9 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLRN3Q8NCR9 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLRN3Q8NCR9 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLRN3Q8NCR9 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
CLRN3Q8NCR9 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.05■□□□□ 0.96
CLRN3Q8NCR9 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLRN3Q8NCR9 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CLRN3Q8NCR9 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CLRN3Q8NCR9 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLRN3Q8NCR9 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLRN3Q8NCR9 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.03■□□□□ 0.96
CLRN3Q8NCR9 AL449106.1-201ENST00000608517 1980 ntBASIC21.03■□□□□ 0.96
CLRN3Q8NCR9 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CLRN3Q8NCR9 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLRN3Q8NCR9 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
CLRN3Q8NCR9 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CLRN3Q8NCR9 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLRN3Q8NCR9 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
CLRN3Q8NCR9 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CLRN3Q8NCR9 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21■□□□□ 0.95
CLRN3Q8NCR9 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLRN3Q8NCR9 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLRN3Q8NCR9 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLRN3Q8NCR9 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLRN3Q8NCR9 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CLRN3Q8NCR9 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLRN3Q8NCR9 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLRN3Q8NCR9 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CLRN3Q8NCR9 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC20.97■□□□□ 0.95
CLRN3Q8NCR9 AC093323.1-202ENST00000635031 2045 ntBASIC20.97■□□□□ 0.95
CLRN3Q8NCR9 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLRN3Q8NCR9 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLRN3Q8NCR9 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.95■□□□□ 0.94
CLRN3Q8NCR9 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLRN3Q8NCR9 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC20.95■□□□□ 0.94
CLRN3Q8NCR9 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC20.95■□□□□ 0.94
CLRN3Q8NCR9 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLRN3Q8NCR9 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLRN3Q8NCR9 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLRN3Q8NCR9 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLRN3Q8NCR9 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
CLRN3Q8NCR9 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLRN3Q8NCR9 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.94■□□□□ 0.94
CLRN3Q8NCR9 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
CLRN3Q8NCR9 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLRN3Q8NCR9 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLRN3Q8NCR9 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLRN3Q8NCR9 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLRN3Q8NCR9 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLRN3Q8NCR9 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.91■□□□□ 0.94
CLRN3Q8NCR9 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CLRN3Q8NCR9 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CLRN3Q8NCR9 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLRN3Q8NCR9 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLRN3Q8NCR9 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLRN3Q8NCR9 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLRN3Q8NCR9 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.87■□□□□ 0.93
CLRN3Q8NCR9 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.87■□□□□ 0.93
CLRN3Q8NCR9 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLRN3Q8NCR9 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
CLRN3Q8NCR9 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLRN3Q8NCR9 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLRN3Q8NCR9 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms