Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
NPHP1O15259 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
NPHP1O15259 METRNL-202ENST00000570778 967 ntTSL 5 BASIC33.38■■■□□ 2.93
NPHP1O15259 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC33.38■■■□□ 2.93
NPHP1O15259 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
NPHP1O15259 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC33.36■■■□□ 2.93
NPHP1O15259 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC33.36■■■□□ 2.93
NPHP1O15259 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC33.36■■■□□ 2.93
NPHP1O15259 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
NPHP1O15259 DUX4L13-201ENST00000554103 1267 ntBASIC33.35■■■□□ 2.93
NPHP1O15259 DUX4L15-201ENST00000611059 1267 ntBASIC33.35■■■□□ 2.93
NPHP1O15259 DUX4L23-201ENST00000615195 1269 ntBASIC33.35■■■□□ 2.93
NPHP1O15259 DUX4L24-201ENST00000617576 1269 ntBASIC33.35■■■□□ 2.93
NPHP1O15259 DUX4L22-201ENST00000618238 1269 ntBASIC33.35■■■□□ 2.93
NPHP1O15259 DUX4L20-201ENST00000619712 1269 ntBASIC33.35■■■□□ 2.93
NPHP1O15259 DUX4L21-201ENST00000622058 1269 ntBASIC33.35■■■□□ 2.93
NPHP1O15259 DUX4L10-201ENST00000622460 1267 ntBASIC33.35■■■□□ 2.93
NPHP1O15259 DUX4L25-201ENST00000624915 1269 ntBASIC33.35■■■□□ 2.93
NPHP1O15259 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
NPHP1O15259 EI24-212ENST00000615917 1407 ntTSL 2 BASIC33.35■■■□□ 2.93
NPHP1O15259 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC33.34■■■□□ 2.93
NPHP1O15259 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC33.34■■■□□ 2.93
NPHP1O15259 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC33.34■■■□□ 2.93
NPHP1O15259 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC33.33■■■□□ 2.93
NPHP1O15259 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC33.33■■■□□ 2.93
NPHP1O15259 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC33.32■■■□□ 2.93
NPHP1O15259 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC33.32■■■□□ 2.92
NPHP1O15259 HES6-205ENST00000409356 528 ntTSL 2 BASIC33.31■■■□□ 2.92
NPHP1O15259 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC33.31■■■□□ 2.92
NPHP1O15259 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC33.3■■■□□ 2.92
NPHP1O15259 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC33.3■■■□□ 2.92
NPHP1O15259 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC33.29■■■□□ 2.92
NPHP1O15259 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.91
NPHP1O15259 CHML-204ENST00000638121 920 ntTSL 2 BASIC33.25■■■□□ 2.91
NPHP1O15259 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC33.25■■■□□ 2.91
NPHP1O15259 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC33.25■■■□□ 2.91
NPHP1O15259 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC33.25■■■□□ 2.91
NPHP1O15259 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC33.25■■■□□ 2.91
NPHP1O15259 AC120057.4-201ENST00000624722 1615 ntBASIC33.24■■■□□ 2.91
NPHP1O15259 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
NPHP1O15259 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC33.22■■■□□ 2.91
NPHP1O15259 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC33.22■■■□□ 2.91
NPHP1O15259 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC33.22■■■□□ 2.91
NPHP1O15259 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
NPHP1O15259 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
NPHP1O15259 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
NPHP1O15259 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC33.2■■■□□ 2.91
NPHP1O15259 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC33.2■■■□□ 2.9
NPHP1O15259 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC33.18■■■□□ 2.9
NPHP1O15259 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
NPHP1O15259 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC33.18■■■□□ 2.9
NPHP1O15259 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC33.18■■■□□ 2.9
NPHP1O15259 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
NPHP1O15259 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC33.16■■■□□ 2.9
NPHP1O15259 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC33.16■■■□□ 2.9
NPHP1O15259 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC33.16■■■□□ 2.9
NPHP1O15259 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
NPHP1O15259 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC33.15■■■□□ 2.9
NPHP1O15259 CHST11-202ENST00000546689 756 ntTSL 2 BASIC33.13■■■□□ 2.89
NPHP1O15259 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC33.13■■■□□ 2.89
NPHP1O15259 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC33.11■■■□□ 2.89
NPHP1O15259 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC33.11■■■□□ 2.89
NPHP1O15259 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
NPHP1O15259 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
NPHP1O15259 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
NPHP1O15259 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
NPHP1O15259 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
NPHP1O15259 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC33.11■■■□□ 2.89
NPHP1O15259 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC33.11■■■□□ 2.89
NPHP1O15259 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC33.11■■■□□ 2.89
NPHP1O15259 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC33.11■■■□□ 2.89
NPHP1O15259 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC33.09■■■□□ 2.89
NPHP1O15259 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
NPHP1O15259 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
NPHP1O15259 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC33.08■■■□□ 2.89
NPHP1O15259 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC33.08■■■□□ 2.89
NPHP1O15259 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC33.08■■■□□ 2.89
NPHP1O15259 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC33.07■■■□□ 2.89
NPHP1O15259 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC33.07■■■□□ 2.88
NPHP1O15259 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC33.05■■■□□ 2.88
NPHP1O15259 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
NPHP1O15259 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
NPHP1O15259 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC33.04■■■□□ 2.88
NPHP1O15259 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
NPHP1O15259 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
NPHP1O15259 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC33.03■■■□□ 2.88
NPHP1O15259 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC33.02■■■□□ 2.88
NPHP1O15259 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC33.01■■■□□ 2.88
NPHP1O15259 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC33.01■■■□□ 2.88
NPHP1O15259 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC33■■■□□ 2.87
NPHP1O15259 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC33■■■□□ 2.87
NPHP1O15259 TPT1-202ENST00000379055 948 ntTSL 2 BASIC33■■■□□ 2.87
NPHP1O15259 SRP68-213ENST00000629930 165 ntTSL 5 BASIC33■■■□□ 2.87
NPHP1O15259 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC32.99■■■□□ 2.87
NPHP1O15259 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC32.99■■■□□ 2.87
NPHP1O15259 RARRES2P2-201ENST00000394842 485 ntBASIC32.99■■■□□ 2.87
NPHP1O15259 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC32.99■■■□□ 2.87
NPHP1O15259 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
NPHP1O15259 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
NPHP1O15259 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC32.98■■■□□ 2.87
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms