Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
CACNA1AO00555 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC26.03■■□□□ 1.76
CACNA1AO00555 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CACNA1AO00555 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CACNA1AO00555 AL035685.1-201ENST00000636663 812 ntBASIC26.03■■□□□ 1.76
CACNA1AO00555 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CACNA1AO00555 TPT1-202ENST00000379055 948 ntTSL 2 BASIC26■■□□□ 1.75
CACNA1AO00555 GFER-205ENST00000569451 517 ntTSL 5 BASIC26■■□□□ 1.75
CACNA1AO00555 TRIR-205ENST00000592273 783 ntTSL 3 BASIC26■■□□□ 1.75
CACNA1AO00555 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CACNA1AO00555 TSPY13P-201ENST00000338964 914 ntBASIC25.98■■□□□ 1.75
CACNA1AO00555 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC25.97■■□□□ 1.75
CACNA1AO00555 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CACNA1AO00555 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
CACNA1AO00555 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CACNA1AO00555 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CACNA1AO00555 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
CACNA1AO00555 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.75
CACNA1AO00555 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
CACNA1AO00555 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CACNA1AO00555 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CACNA1AO00555 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC25.93■■□□□ 1.74
CACNA1AO00555 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CACNA1AO00555 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CACNA1AO00555 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
CACNA1AO00555 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.9■■□□□ 1.74
CACNA1AO00555 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC25.9■■□□□ 1.74
CACNA1AO00555 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC25.9■■□□□ 1.74
CACNA1AO00555 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
CACNA1AO00555 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
CACNA1AO00555 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC25.87■■□□□ 1.73
CACNA1AO00555 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
CACNA1AO00555 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC25.87■■□□□ 1.73
CACNA1AO00555 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC25.87■■□□□ 1.73
CACNA1AO00555 CEP120-209ENST00000515110 606 ntTSL 3 BASIC25.87■■□□□ 1.73
CACNA1AO00555 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
CACNA1AO00555 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
CACNA1AO00555 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CACNA1AO00555 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC25.85■■□□□ 1.73
CACNA1AO00555 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC25.84■■□□□ 1.73
CACNA1AO00555 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC25.84■■□□□ 1.73
CACNA1AO00555 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
CACNA1AO00555 AL451085.2-201ENST00000605085 799 ntBASIC25.84■■□□□ 1.73
CACNA1AO00555 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
CACNA1AO00555 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC25.83■■□□□ 1.73
CACNA1AO00555 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
CACNA1AO00555 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC25.82■■□□□ 1.72
CACNA1AO00555 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC25.81■■□□□ 1.72
CACNA1AO00555 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC25.81■■□□□ 1.72
CACNA1AO00555 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CACNA1AO00555 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CACNA1AO00555 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CACNA1AO00555 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.8■■□□□ 1.72
CACNA1AO00555 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CACNA1AO00555 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.79■■□□□ 1.72
CACNA1AO00555 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CACNA1AO00555 KRT18P60-201ENST00000312876 1297 ntBASIC25.78■■□□□ 1.72
CACNA1AO00555 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC25.78■■□□□ 1.72
CACNA1AO00555 HYI-213ENST00000583037 1322 ntTSL 5 BASIC25.77■■□□□ 1.72
CACNA1AO00555 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CACNA1AO00555 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CACNA1AO00555 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CACNA1AO00555 AC004987.1-201ENST00000428627 508 ntBASIC25.74■■□□□ 1.71
CACNA1AO00555 U85056.1-201ENST00000616429 682 ntBASIC25.74■■□□□ 1.71
CACNA1AO00555 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC25.73■■□□□ 1.71
CACNA1AO00555 ATP5G2P3-201ENST00000429083 425 ntBASIC25.73■■□□□ 1.71
CACNA1AO00555 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
CACNA1AO00555 HES4-202ENST00000428771 1040 ntTSL 2 BASIC25.72■■□□□ 1.71
CACNA1AO00555 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC25.71■■□□□ 1.71
CACNA1AO00555 GUK1-208ENST00000366728 842 ntTSL 2 BASIC25.71■■□□□ 1.71
CACNA1AO00555 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.71
CACNA1AO00555 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.71
CACNA1AO00555 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CACNA1AO00555 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC25.69■■□□□ 1.7
CACNA1AO00555 AC022413.1-201ENST00000624602 984 ntBASIC25.69■■□□□ 1.7
CACNA1AO00555 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC25.69■■□□□ 1.7
CACNA1AO00555 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CACNA1AO00555 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CACNA1AO00555 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC25.67■■□□□ 1.7
CACNA1AO00555 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CACNA1AO00555 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC25.67■■□□□ 1.7
CACNA1AO00555 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CACNA1AO00555 AC131212.1-201ENST00000613771 668 ntBASIC25.67■■□□□ 1.7
CACNA1AO00555 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CACNA1AO00555 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CACNA1AO00555 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CACNA1AO00555 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
CACNA1AO00555 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CACNA1AO00555 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC25.64■■□□□ 1.69
CACNA1AO00555 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25.63■■□□□ 1.69
CACNA1AO00555 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC25.63■■□□□ 1.69
CACNA1AO00555 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC25.62■■□□□ 1.69
CACNA1AO00555 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CACNA1AO00555 HES4-204ENST00000484667 667 ntTSL 3 BASIC25.61■■□□□ 1.69
CACNA1AO00555 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CACNA1AO00555 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC25.6■■□□□ 1.69
CACNA1AO00555 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC25.59■■□□□ 1.69
CACNA1AO00555 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CACNA1AO00555 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
CACNA1AO00555 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC25.57■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms