Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.93■■□□□ 1.1
SNX9Q9Y5X1 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SNX9Q9Y5X1 AC091874.3-201ENST00000512672 1195 ntBASIC21.93■■□□□ 1.1
SNX9Q9Y5X1 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.93■■□□□ 1.1
SNX9Q9Y5X1 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SNX9Q9Y5X1 AC027702.1-201ENST00000563810 1770 ntBASIC21.93■■□□□ 1.1
SNX9Q9Y5X1 AC087633.2-202ENST00000565166 1439 ntBASIC21.93■■□□□ 1.1
SNX9Q9Y5X1 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SNX9Q9Y5X1 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SNX9Q9Y5X1 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.93■■□□□ 1.1
SNX9Q9Y5X1 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SNX9Q9Y5X1 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.93■■□□□ 1.1
SNX9Q9Y5X1 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SNX9Q9Y5X1 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.93■■□□□ 1.1
SNX9Q9Y5X1 AL137060.1-201ENST00000618151 2648 ntBASIC21.93■■□□□ 1.1
SNX9Q9Y5X1 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.92■■□□□ 1.1
SNX9Q9Y5X1 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.91■■□□□ 1.1
SNX9Q9Y5X1 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
SNX9Q9Y5X1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.91■■□□□ 1.1
SNX9Q9Y5X1 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SNX9Q9Y5X1 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SNX9Q9Y5X1 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SNX9Q9Y5X1 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
SNX9Q9Y5X1 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SNX9Q9Y5X1 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SNX9Q9Y5X1 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.91■■□□□ 1.1
SNX9Q9Y5X1 AC105020.6-201ENST00000621523 1217 ntBASIC21.91■■□□□ 1.1
SNX9Q9Y5X1 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
SNX9Q9Y5X1 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.91■■□□□ 1.1
SNX9Q9Y5X1 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 AC097658.1-201ENST00000475555 843 ntBASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 MYC-209ENST00000641252 345 ntBASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SNX9Q9Y5X1 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.89■■□□□ 1.1
SNX9Q9Y5X1 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
SNX9Q9Y5X1 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
SNX9Q9Y5X1 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
SNX9Q9Y5X1 PGM5P4-201ENST00000421970 445 ntBASIC21.89■■□□□ 1.09
SNX9Q9Y5X1 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.89■■□□□ 1.09
SNX9Q9Y5X1 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SNX9Q9Y5X1 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.89■■□□□ 1.09
SNX9Q9Y5X1 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
SNX9Q9Y5X1 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.89■■□□□ 1.09
SNX9Q9Y5X1 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SNX9Q9Y5X1 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SNX9Q9Y5X1 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 KRT18P6-201ENST00000555540 1265 ntBASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 AC083880.1-201ENST00000608266 535 ntBASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 AL356652.1-201ENST00000615962 565 ntBASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SNX9Q9Y5X1 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SNX9Q9Y5X1 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
SNX9Q9Y5X1 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SNX9Q9Y5X1 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms