Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCAL1Q9NZC9 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMARCAL1Q9NZC9 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.52■■□□□ 1.04
SMARCAL1Q9NZC9 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SMARCAL1Q9NZC9 STAC-204ENST00000457375 1366 ntTSL 2 BASIC21.52■■□□□ 1.04
SMARCAL1Q9NZC9 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.52■■□□□ 1.04
SMARCAL1Q9NZC9 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.52■■□□□ 1.04
SMARCAL1Q9NZC9 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.52■■□□□ 1.04
SMARCAL1Q9NZC9 AL136967.2-201ENST00000623968 743 ntBASIC21.52■■□□□ 1.04
SMARCAL1Q9NZC9 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMARCAL1Q9NZC9 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.04
SMARCAL1Q9NZC9 AL020996.1-203ENST00000536896 2307 ntBASIC21.52■■□□□ 1.04
SMARCAL1Q9NZC9 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.52■■□□□ 1.04
SMARCAL1Q9NZC9 TSPY26P-201ENST00000476365 1326 ntBASIC21.52■■□□□ 1.03
SMARCAL1Q9NZC9 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
SMARCAL1Q9NZC9 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
SMARCAL1Q9NZC9 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 AC092720.2-201ENST00000602388 1665 ntBASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 SUDS3P1-201ENST00000505831 966 ntBASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 AC142381.2-201ENST00000566120 298 ntBASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 AC005837.3-201ENST00000612163 286 ntBASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 SMG8-203ENST00000578922 2178 ntBASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCAL1Q9NZC9 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.5■■□□□ 1.03
SMARCAL1Q9NZC9 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.5■■□□□ 1.03
SMARCAL1Q9NZC9 RASA4CP-201ENST00000424092 1398 ntBASIC21.5■■□□□ 1.03
SMARCAL1Q9NZC9 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMARCAL1Q9NZC9 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
SMARCAL1Q9NZC9 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SMARCAL1Q9NZC9 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.5■■□□□ 1.03
SMARCAL1Q9NZC9 AC091305.1-201ENST00000479476 895 ntBASIC21.5■■□□□ 1.03
SMARCAL1Q9NZC9 EEF1DP3-203ENST00000566025 782 ntBASIC21.5■■□□□ 1.03
SMARCAL1Q9NZC9 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.5■■□□□ 1.03
SMARCAL1Q9NZC9 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMARCAL1Q9NZC9 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMARCAL1Q9NZC9 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMARCAL1Q9NZC9 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SMARCAL1Q9NZC9 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 AP004607.4-201ENST00000530158 1459 ntBASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 MIR638-201ENST00000385237 100 ntBASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
SMARCAL1Q9NZC9 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SMARCAL1Q9NZC9 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SMARCAL1Q9NZC9 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
SMARCAL1Q9NZC9 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.47■■□□□ 1.03
SMARCAL1Q9NZC9 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SMARCAL1Q9NZC9 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMARCAL1Q9NZC9 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMARCAL1Q9NZC9 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMARCAL1Q9NZC9 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
SMARCAL1Q9NZC9 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.47■■□□□ 1.03
SMARCAL1Q9NZC9 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMARCAL1Q9NZC9 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms