Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 UBE2SP1-201ENST00000450587 669 ntBASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TM9SF3Q9HD45 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 SLC25A24-204ENST00000569674 2357 ntBASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 CYP21A1P-202ENST00000354927 1481 ntBASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 AC008550.1-201ENST00000511500 884 ntBASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.46■□□□□ 0.87
TM9SF3Q9HD45 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
TM9SF3Q9HD45 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 AC026310.3-201ENST00000625186 2373 ntBASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TM9SF3Q9HD45 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TM9SF3Q9HD45 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.44■□□□□ 0.86
TM9SF3Q9HD45 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TM9SF3Q9HD45 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.44■□□□□ 0.86
TM9SF3Q9HD45 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TM9SF3Q9HD45 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TM9SF3Q9HD45 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
TM9SF3Q9HD45 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.44■□□□□ 0.86
TM9SF3Q9HD45 KRT17P3-201ENST00000420566 1262 ntBASIC20.44■□□□□ 0.86
TM9SF3Q9HD45 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
TM9SF3Q9HD45 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TM9SF3Q9HD45 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
TM9SF3Q9HD45 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.44■□□□□ 0.86
TM9SF3Q9HD45 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.44■□□□□ 0.86
TM9SF3Q9HD45 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.44■□□□□ 0.86
TM9SF3Q9HD45 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 RPPH1-201ENST00000516869 333 ntBASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 SOX15-203ENST00000570788 1093 ntBASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
TM9SF3Q9HD45 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms