Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 LHPP-203ENST00000392757 840 ntTSL 3 BASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 AC121338.2-201ENST00000622535 1744 ntBASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 PCDHAC2-203ENST00000615316 3011 ntBASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 AP005212.1-201ENST00000581547 1997 ntBASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 AC099791.1-201ENST00000416440 715 ntBASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 PLK5-205ENST00000642079 1969 ntBASIC17.53■□□□□ 0.4
CHMP1AQ9HD42 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP1AQ9HD42 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP1AQ9HD42 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CHMP1AQ9HD42 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CHMP1AQ9HD42 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP1AQ9HD42 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP1AQ9HD42 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP1AQ9HD42 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CHMP1AQ9HD42 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP1AQ9HD42 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP1AQ9HD42 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC17.52■□□□□ 0.4
CHMP1AQ9HD42 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC17.52■□□□□ 0.4
CHMP1AQ9HD42 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP1AQ9HD42 AC027682.1-201ENST00000562846 899 ntBASIC17.52■□□□□ 0.4
CHMP1AQ9HD42 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC17.52■□□□□ 0.4
CHMP1AQ9HD42 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHMP1AQ9HD42 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.52■□□□□ 0.39
CHMP1AQ9HD42 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
CHMP1AQ9HD42 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHMP1AQ9HD42 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHMP1AQ9HD42 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHMP1AQ9HD42 AC008406.3-201ENST00000620001 1374 ntBASIC17.52■□□□□ 0.39
CHMP1AQ9HD42 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CHMP1AQ9HD42 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
CHMP1AQ9HD42 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC17.51■□□□□ 0.39
CHMP1AQ9HD42 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP1AQ9HD42 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC17.51■□□□□ 0.39
CHMP1AQ9HD42 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC17.51■□□□□ 0.39
CHMP1AQ9HD42 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP1AQ9HD42 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP1AQ9HD42 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP1AQ9HD42 AC005224.4-201ENST00000583262 1652 ntBASIC17.51■□□□□ 0.39
CHMP1AQ9HD42 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP1AQ9HD42 AC090340.1-201ENST00000620778 4980 ntBASIC17.51■□□□□ 0.39
CHMP1AQ9HD42 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP1AQ9HD42 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC17.51■□□□□ 0.39
CHMP1AQ9HD42 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 ERF-202ENST00000440177 2032 ntTSL 2 BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 MFF-208ENST00000409616 1247 ntTSL 5 BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHMP1AQ9HD42 PBX2P1-201ENST00000493219 1291 ntBASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms